BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF10FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1249 0.0
>3x_Contig1772
Length = 25851
Score = 1249 bits (630), Expect = 0.0
Identities = 733/758 (96%), Gaps = 7/758 (0%)
Strand = Plus / Minus
Query: 86 tgcaaagtccaatttcttttctattttcaaaggtgggggtttctctgactcggaacgacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18647 tgcaaagtccaatttcttttctattttcaaaggtgggggtttctctgactcggaacgacc 18588
Query: 146 tccgagaattcccgctatcatatccttgaaccaatcctccgttgagaatggatacaatgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18587 tccgagaattcccgctatcatatccttgaaccaatcctccgttgagaatggatacaatgc 18528
Query: 206 atgtaaaggagagctgaaataattatcgagatgtatccatatgagcttcgcgggaggtag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527 atgtaaaggagagctgaaataattatcgagatgtatccatatgagcttcgcgggaggtag 18468
Query: 266 tagcatccttatatagttcaaaatttctgtttcttcgtcaagagaggcaggggtgttctc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18467 tagcatccttatatagttcaaaatttctgtttcttcgtcaagagaggcaggggtgttctc 18408
Query: 326 gcttttcgattgtgttttatcagtcagcgactgctctcttgtttgccttacgttgttatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18407 gcttttcgattgtgttttatcagtcagcgactgctctcttgtttgccttacgttgttatc 18348
Query: 386 gcattgagttgcctcaaagtagccattgtgattttttgagattttggatccagaacttgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18347 gcattgagttgcctcaaagtagccattgtgattttttgagattttggatccagaacttgt 18288
Query: 446 tcttgactttggggaatcttcgtttgacttaattatagcacttgtattgataatttctgc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18287 tcttgactttggggaatcttcgtttgacttaattatagcacttgtattgataatttctgc 18228
Query: 506 tagagaaggtctgtttgatcctttctcgtttgttaaaatgccatccaaattctcatcttc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18227 tagagaaggtctgtttgatcctttctcgtttgttaaaatgccatccaaattctcatcttc 18168
Query: 566 -aggtactttcgagcaaattttgctctttgtgcttgattaccaacctcaaactccgaaag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 18167 aaggtactttcgagcaaattttgctctttgtgcttgattaccaacctcaaactccg-aag 18109
Query: 625 tagagtc-ttaacagtgtctcttacttcttctacatcattgttttcatcatctggtacat 683
||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 18108 tagagtctttaacagtgtctcttactccttctacatcattgttttcatcatctgttacat 18049
Query: 684 tagcactgtcgtctttttctgttatgttgctagttgagcactcattcgtggatatttcaa 743
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 18048 tagcactgtcgtctttttctgttatgttgctagttgagcactcatcgttgtatatttcaa 17989
Query: 744 cccaataaa-ttaccgccgtattattttcttttttgtttcccacgaaaacttttttttgc 802
|||||||| |||| ||||||| | |||| ||| |||| |||||||||| || ||||||
Sbjct: 17988 -ccaataaatttacggccgtatcagtttcatttctgttcgccacgaaaac-ttcttttgc 17931
Query: 803 aggggctgggatatattcaaagatttgaattcttgcgg 840
| | ||||| |||||||| ||||||||||| |||||||
Sbjct: 17930 aagtgctggaatatattc-aagatttgaatacttgcgg 17894
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7284
Number of Sequences: 1807
Number of extensions: 7284
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)