BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF11RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1171 1568 0.0
>3x_Contig1171
Length = 5011
Score = 1568 bits (791), Expect = 0.0
Identities = 878/899 (97%), Gaps = 7/899 (0%)
Strand = Plus / Minus
Query: 45 ctttgatcaatgcattttacagtaagaacctttcc-caaggcagaagttaatggatctaa 103
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4616 ctttgatcaatgcattttacagtaagaacctttccacaaggcagaagttaatggatctaa 4557
Query: 104 cgaagaaacggttcattcttctattggtgaccattctatcgttggtggcgccttcccatg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4556 cgaagaaacggttcattcttctattggtgaccattctatcgttggtggcgccttcccatg 4497
Query: 164 tgaggataacaaccgacaatgaatcgataccgaagggaaccatatatatggatcatcata 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4496 tgaggataacaaccgacaatgaatcgataccgaagggaaccatatatatggatcatcata 4437
Query: 224 agggcaggttaatatccaaagctaattccaatgcagtggttatagctaatcaccaaattt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4436 agggcaggttaatatccaaagctaattccaatgcagtggttatagctaatcaccaaattt 4377
Query: 284 acactgattgggtgtttttatggtggttagcatatgtgtcagaaagggctggtaacgttt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4376 acactgattgggtgtttttatggtggttagcatatgtgtcagaaagggctggtaacgttt 4317
Query: 344 acattatgttgaagaaatcattagagtcgataccacttctgggaagcggtatgacaaatt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4316 acattatgttgaagaaatcattagagtcgataccacttctgggaagcggtatgacaaatt 4257
Query: 404 acaagtttatatttatgaatagaaagtgggaacaggacagaatcaatctatcaaataaat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4256 acaagtttatatttatgaatagaaagtgggaacaggacagaatcaatctatcaaataaat 4197
Query: 464 tgcacgaaatagatttggatgctcgtggggtcggaatcattgctgggaactctccaacga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4196 tgcacgaaatagatttggatgctcgtggggtcggaatcattgctgggaactctccaacga 4137
Query: 524 ctaagacagaggaaggacttaacatatgggacgaggcgaaagtggagaagaagggtgagc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4136 ctaagacagaggaaggacttaacatatgggacgaggcgaaagtggagaagaagggtgagc 4077
Query: 584 aatggccatactggttaatgttgttcccagagggcacaaaccttatcgctggtacccgtg 643
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4076 aatggccatactggttaatgttgttcccagagggcacaaaccttagcgctggtacccgtg 4017
Query: 644 ctagatataaggcatttgcagaataatcangactntctccatttaaacatgttctactac 703
||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct: 4016 ctagaaataaggcatttgcagaaaaatcaggactttctccatttaaacatgttctactac 3957
Query: 704 caagaaccactggattgaagttttgcttgcagaaactttcgc-acagttgcgagtacgtt 762
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 3956 caagaaccactggattgaagttttgcttgcagaaac-ttcgcaacagttgcgagtacgtt 3898
Query: 763 tatgatattacaattgcatattcaggcggtagagctgaagactatggacatgacttttac 822
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct: 3897 tatgatattacaattgcatattcaggcgttagagctgaagactatggacaagacatttac 3838
Query: 823 -aactangaaacatatttctcaaggg-atagctncaaaattggtggacatct-tatcaga 879
||||| |||||||||| |||||||| | |||| |||||||||||||||||| |||||||
Sbjct: 3837 aaactaggaaacatattcctcaagggaaaagctccaaaattggtggacatctatatcaga 3778
Query: 880 gcgatcagattagacgat-tttcacttgaagatgatgatgaattccattcttgcctttt 937
|||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 3777 gcgatcagattagacgatattccacttgaagatgatgatgaattccattcttggctttt 3719
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6749
Number of Sequences: 1807
Number of extensions: 6749
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)