BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF12FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 1624 0.0
>3x_Contig1735
Length = 19486
Score = 1624 bits (819), Expect = 0.0
Identities = 872/883 (98%), Gaps = 5/883 (0%)
Strand = Plus / Minus
Query: 82 tgtgatggcatgcgccaaatcgattgaagtcaaaattgatgaggcaatgattggatgatg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12776 tgtgatggcatgcgccaaatcgattgaagtcaaaattgatgaggcaatgattggatgatg 12717
Query: 142 gccatttggttccgccacaagggatagctgtaccaaaatagctcttgatctccaccagta 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12716 gccatttggttccgccacaagggatagctgtaccaaaatagctcttgatctccaccagta 12657
Query: 202 agctagtgccgtagtagggtccatatctttggaaatggccacctgaccatcgtcatacga 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12656 agctagtgccgtagtagggtccatatctttggaaatggccacctgaccatcgtcatacga 12597
Query: 262 atccaggccaaataaagtcttcccatctgttaattcttccaacaaaa-tcaatgccaaaa 320
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 12596 atccaggccaaataaagtcttcccatctgttaattcttccaacaaaaatcaatgccaaaa 12537
Query: 321 tcaaatagacgggatcatcgcatagctcgtaggcagtttggcctgaaacattcaacagct 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12536 tcaaatagacgggatcatcgcatagctcgtaggcagtttggcctgaaacattcaacagct 12477
Query: 381 ctgaaaagattgaattcttagattcgtcaatctgaccctggttgaataacgtcgcataag 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12476 ctgaaaagattgaattcttagattcgtcaatctgaccctggttgaataacgtcgcataag 12417
Query: 441 atgaggttggtgtagcctgtcctgtaaagttattctggataaagcactgtaaaaaagcaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416 atgaggttggtgtagcctgtcctgtaaagttattctggataaagcactgtaaaaaagcaa 12357
Query: 501 tggcaacgacaagtgattcggaagaagagtgactcgatagaacattttcatgtgcccatt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12356 tggcaacgacaagtgattcggaagaagagtgactcgatagaacattttcatgtgcccatt 12297
Query: 561 gttttagaacatcaatatcactagatttctcgattagtttactgtcaataccttttttga 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12296 gttttagaacatcaatatcactagatttctcgattagtttactgtcaataccttttttga 12237
Query: 621 tagatttgttaattacttcatgactgttacctgatagaatctgagacgccgcccaacata 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12236 tagatttgttaattacttcatgactgttacctgatagaatctgagacgccgcccaacata 12177
Query: 681 atggatgatccgacatcgattcaactacagagggttctgaggccagaagtaaatggctat 740
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12176 atggatgatccgacaacgattcaactacagagggttctgaggccagaagtaaatggctat 12117
Query: 741 gtagtagatcatccatgtgtataattcctctgaaagctgaccagtggtttcagtgttaca 800
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12116 gtagtagaacatccatgtgtataattcctctgaaagctgaccagtggtttcagtgttaca 12057
Query: 801 agatttataagcgatactaatccattagctttctaatctcatcgtttctcgaacgatctc 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12056 agatttataagcgatactaatccattagctttctaatctcatcgtttctcgaacgatctc 11997
Query: 861 atcggtttaaactggcaaaaactttttttttagctttctttcatgatacagagcaatgtc 920
||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11996 atcggttaaaactgtc-aaaactttttttttagctttctttcatgatacagagcaatg-c 11939
Query: 921 ag-acagatagacaaattatgcccgtggatttaaactaacgtc 962
|| ||||| ||||||||||||| ||| ||||||||||||||||
Sbjct: 11938 agaacagaaagacaaattatgcacgt-gatttaaactaacgtc 11897
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6317
Number of Sequences: 1807
Number of extensions: 6317
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)