BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG01FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig431 1275 0.0
3x_Contig1335 198 1e-50
>3x_Contig431
Length = 1757
Score = 1275 bits (643), Expect = 0.0
Identities = 685/694 (98%), Gaps = 4/694 (0%)
Strand = Plus / Plus
Query: 206 tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 64
Query: 266 ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacaaaaagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65 ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacgaaaagt 124
Query: 326 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 184
Query: 386 ataaatatagcgggcgtaataccacccaaggccatacaattacaccccc-aataagattc 444
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 185 ataaatatagcgggcgtaataccacccaaggccatacaattacaccccccaataagattc 244
Query: 445 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 304
Query: 505 agccatcccaacaaatataggcctggaggagtagtgattttcccattccaagagtaccat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agccatcccaacaaatataggcctggaggagtagtgattttcccattccaagagtaccat 364
Query: 565 tttcctctaagatatcttaacgtttggtcaacatggaacttctcatcaatgaacacataa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttcctctaagatatcttaacgtttggtcaacatggaacttctcatcaatgaacacataa 424
Query: 625 ggaagtccagtagtgttcaatgtatatgccaaataacagaatagtgcagttgcgatgggc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggaagtccagtagtgttcaatgtatatgccaaataacagaatagtgcagttgcgatgggc 484
Query: 685 caaattattacgttcgcataaatcccaaccactacttctctctccacatcccntggaaaa 744
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 485 caaattattacgttcgcataaatcccaaccactacttctctctccacatccc-tggaaaa 543
Query: 745 ctccactaccacagcattcttctcttcagtttctgatacgctcattatggcagcgtcact 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctccactaccacagcattcttctcttcagtttctgatacgctcattatggcagcgtcact 603
Query: 805 cgggtatcgtttgctagcttgtggacatg-ata-ttcccaactgtttctccatcttgtat 862
||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||
Sbjct: 604 cgggtatcgtttgctagctgttggacaagaatatttcccaactgtttctccatcttgtat 663
Query: 863 ttgngatgatatcatactgagtttaaaggttttt 896
||| ||||||||||||||||||||||||||||||
Sbjct: 664 ttgtgatgatatcatactgagtttaaaggttttt 697
>3x_Contig1335
Length = 8696
Score = 198 bits (100), Expect = 1e-50
Identities = 114/116 (98%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 87 caaataattgttgaaattcaacgtattgaagtttttctcaatcatagcacgacgttccac 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8578 caaataattgttgaaattcaacgtattgaagtttttctcaatcatagcacgacg-tccac 8636
Query: 147 aacaagaatcataattaaaacgttccatacaatattagtctg-tctaaagaggcaa 201
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8637 aacaagaatcataattaaaacgttccatacaatattagtctgttctaaagaggcaa 8692
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5717
Number of Sequences: 1807
Number of extensions: 5717
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 2
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)