BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG02FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig511 1558 0.0
>3x_Contig511
Length = 2409
Score = 1558 bits (786), Expect = 0.0
Identities = 824/834 (98%), Gaps = 2/834 (0%)
Strand = Plus / Plus
Query: 87 accatttgctccttcaacaacttttcgtcccactgaatatctttggctgcgttttctctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accatttgctccttcaacaacttttcgtcccactgaatatctttggctgcgttttctctt 564
Query: 147 aacctcagcagcctttccttgtactcttcctgtttatccgagatttgggtgaaaatttgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacctcagcagcctttccttgtactcttcctgtttatccgagatttgggtgaaaatttgt 624
Query: 207 tcaatagcctcaacttcaagcttattatgatctctatattgagaaatgtatctgtaacga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcaatagcctcaacttcaagcttattatgatctctatattgagaaatgtatctgtaacga 684
Query: 267 taaatcaaattttctaattgttctttcgtttcaggtagtggcaagattactctttccacc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaatcaaattttctaattgttctttcgtttcaggtagtggcaagattactctttccacc 744
Query: 327 ttcttcatttcttctagaacagcggcaatctggttctgtccaatagcactaccactgtcg 386
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 745 ttcttcatttcttctagaacagcggcaatctggttctgtccaatagcactaacactgtcg 804
Query: 387 ttccgaaaattgttgttgcttcctttgtcagcaccaacatggttgtcttcgatattgccg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttccgaaaattgttgttgcttcctttgtcagcaccaacatggttgtcttcgatattgccg 864
Query: 447 ttaacgtcctggttttcagtttcggaattcccattatcaacattctcagaattcactata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttaacgtcctggttttcagtttcggaattcccattatcaacattctcagaattcactata 924
Query: 507 ggaagcggataaggaggcgctgtatccgcgttattcgttacgacgacttgatccattgtt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ggaagcggataaggaggcgctgtatccgcgttattcgttacgacgacttgatccattgtt 984
Query: 567 gttttatttcacacttcttaacgtgatccatgtctcttcccgctagtgagctttaaacct 626
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 985 gttttatttcacacttcttaacgtgatccaggtctcttcccgctagtgagctttaaacct 1044
Query: 627 tttttattctgaaagggggtaaaacaataactgaagtcctgctaaaaaaattcagagttg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tttttattctgaaagggggtaaaacaataactgaagtcctgctaaaaaaattcagagttg 1104
Query: 687 tcacaaagctaacgcgatacaaacaggtactattgccctagaattctttactgtttcgct 746
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 tcacaaag-taacgcgatacaaacaggtactattgccctagaattctttactgtttcgct 1163
Query: 747 ttcggtgcgtctatttttttagccgccgttgccgtgttgaaaacaaacctctgttcgtcc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 ttcggtgcgtctatttttttagccgccgttgccgtgttgaaaacaaacctctgttcgtcc 1223
Query: 807 ttttctcgtgtcaaaactaaattcagaattaaatcaaactggttttcatattcatccttc 866
||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||
Sbjct: 1224 ttttctcgtgtcaaaactaaattcagaataaaatcaaact-gttttcaaattcatcctct 1282
Query: 867 ttttcacaattttatttatcgggtttacttttttttttgacattcactattgcc 920
||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 1283 ttttcacaattttatttatcgtgtttacttttttctttgacattcactattgcc 1336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8369
Number of Sequences: 1807
Number of extensions: 8369
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)