BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG03RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig981 1380 0.0
>3x_Contig981
Length = 3479
Score = 1380 bits (696), Expect = 0.0
Identities = 816/844 (96%), Gaps = 11/844 (1%)
Strand = Plus / Plus
Query: 46 tggaacatagaactgaaagttcataatagtatgctggtttatcttttgtattgatcgcat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tggaacatagaactgaaagttcataatagtatgctggtttatcttttgtattgatcgcat 808
Query: 106 gaaggagattgtaccaaacgtgattttcagtaacctccagatatttaggtagtgagagct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gaaggagattgtaccaaacgtgattttcagtaacctccagatatttaggtagtgagagct 868
Query: 166 catcagagaagtcatttgccaagaatatttcaatagatgcatcatattcattgcatttga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 catcagagaagtcatttgccaagaatatttcaatagatgcatcatattcattgcatttga 928
Query: 226 acaaagaaagagcatatagtagttcttctactggatccttggacacatggtaaggcttat 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 acaaagaaagagcatatagtagttcttctactggatccttggacacatggtaaggcttag 988
Query: 286 caacaaagtgtaggaattgctttgcacaagtcaaatcttcgccgttcaatatgaaatcgg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 caacaaagtgtaggaattgctttgcacaagtcaaatcttcgccgttcaatatgaaatcgg 1048
Query: 346 aaaaggctcttgtaaatattggaggttcagctgttggagaattcttgacaaaaccaacca 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 aaaaggctcttgtaaatattggaggttcagctgttggagaattcttgacaaaaccaacca 1108
Query: 406 ttaatgtagtaaagtcggttatatcgctgtaagatttcaattgtgcaccataattgtatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 ttaatgtagtaaagtcggttatatcgctgtaagatttcaattgtgcaccataattgtatt 1168
Query: 466 tagtaacatgaccgaaggtctcagaaattgccaataatttatctatttgatacacttgga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 tagtaacatgaccgaaggtctcagaaattgccaataatttatctatttgatacacttgga 1228
Query: 526 gccacaatgagatattgaagtgcaaggtaattaacttagacaacttctctgcaaaaactt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 gccacaatgagatattgaagtgcaaggtaattaacttagacaacttctctgcaaaaactt 1288
Query: 586 catagttgatatccacaatagtgaatactaacantatatcaatgataaacttatccataa 645
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1289 catagttgatatccacaatagtgaatactaacaatatatcaatgataaacttatccataa 1348
Query: 646 tggagagtgtctgcttcaa-gattccatagacaaaacagata--gtaatgtcagtatcta 702
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 1349 tggagagtgtctgcttcaaggattccatagacaaaacagataagaaaatgtcagtatcta 1408
Query: 703 ttaattcaat-actg-aaaagcacctac-ttcanatcacagtgtataaattcggattaaa 759
||| ||||| |||| |||||||||||| |||| |||||||||||||||||||||| |||
Sbjct: 1409 ataaatcaataactgaaaaagcacctactttcaaatcacagtgtataaattcggataaaa 1468
Query: 760 ccttca-cacatcaatagaatttaga-tttccaacaattttgataaattagcacttggga 817
||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 1469 cctccaccacatcaatagaatttagattttccaacaattttgataaattagcactttgga 1528
Query: 818 aa-catttgtaggac-atcttgnaaggacatgggaattttatttttc-atgataacgagg 874
|| ||||||| ||| |||||| ||| |||| ||||||||||||| ||||||||||||
Sbjct: 1529 aaccatttgttagacaatcttgaaagacaatggtaattttatttttcaatgataacgagg 1588
Query: 875 gatt 878
||||
Sbjct: 1589 gatt 1592
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6945
Number of Sequences: 1807
Number of extensions: 6945
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)