BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG04FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1546 0.0
>3x_Contig1698
Length = 21001
Score = 1546 bits (780), Expect = 0.0
Identities = 829/839 (98%), Gaps = 5/839 (0%)
Strand = Plus / Minus
Query: 87 gatccacatttataactaaaaatgggcccgccttcaaatgttttacgttatataaaccga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3658 gatccacatttataactaaaaatgggcccgccttcaaatgttttacgttatataaaccga 3599
Query: 147 cttcatggttctcagggttaccaatggcgaacacaagcccgcttggatcgtaagcaatgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3598 cttcatggttctcagggttaccaatggcgaacacaagcccgcttggatcgtaagcaatgc 3539
Query: 207 atgtggggactaaacttggtataagggcctgtgccttggagcttctcaaatcccaaagtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3538 atgtggggactaaacttggtataagggcctgtgccttggagcttctcaaatcccaaagtc 3479
Query: 267 ttaccgattcgtcatacgatgcagacaaaaaagtatcatccaacggggacatttgtatat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3478 ttaccgattcgtcatacgatgcagacaaaaaagtatcatccaacggggacatttgtatat 3419
Query: 327 cgctcactagagcaccatggccctggaaatatctaaggtatgtgtttgtttcaagattca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3418 cgctcactagagcaccatggccctggaaatatctaaggtatgtgtttgtttcaagattca 3359
Query: 387 aatgccttatgtcaaacgatttcatagtggatgaatagatacattctgattgcgcatgtg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3358 aatgccttatgtcaaacgatttcatagtggatgaatagatacattctgattgcgcatgtg 3299
Query: 447 taaactttgcggaatgacatccgtattttttagaagcgatggtattcaaaaacctgcaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3298 taaactttgcggaatgacatccgtattttttagaagcgatggtattcaaaaacctgcaac 3239
Query: 507 ttactgcatcatatagatgcatattatcactagcagttgcagtcaacaagtactggccat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3238 ttactgcatcatatagatgcatattatcactagcagttgcagtcaacaagtactggccat 3179
Query: 567 ggtcatcaaatgtcactgaagttataggtcccaattctttatcagaaactctgaaggact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3178 ggtcatcaaatgtcactgaagttataggtcccaattctttatcagaaactctgaaggact 3119
Query: 627 tcacaggctcaaatcgtagaagattgctcttggaaatgctaacagtcatatttcctttct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3118 tcacaggctcaaatcgtagaagattgctcttggaaatgctaacagtcatatttcctttct 3059
Query: 687 cagctaacttttagataatcacagaactgttgctaaaccgctggtgtcccgttgagcttc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3058 cagctaacttttagataatcacagaactgttgctaaaccgctggtgtcccgttgagcttc 2999
Query: 747 tctttttgtctncaaattggtaatatttcttgatggtgttaaacag-tttatttaaattt 805
||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 2998 tctttttgtctccaaattggtaatatttcttgatggtgtt-aacagttttatttaaattt 2940
Query: 806 aaatgttcctcgaaattg-aatgacatctgtcaaag-aatcaatagtgttagtcactggc 863
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 2939 aaatgttcctcgaaattgtaatgacatctgtcaaagaaatcaatagtgttagtcacttgc 2880
Query: 864 aagttagaaaaatagagcctttctgttcttactctggctttataaagaactgacatatt 922
|| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2879 -aggtagagaaatagagcctttctggtcttactctggctttataaagaactgacatatt 2822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5798
Number of Sequences: 1807
Number of extensions: 5798
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)