BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG04RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1466 1509 0.0
>3x_Contig1466
Length = 8735
Score = 1509 bits (761), Expect = 0.0
Identities = 843/862 (97%), Gaps = 7/862 (0%)
Strand = Plus / Minus
Query: 48 tttggagaaaactgtgcaagaattgatttcaaaaaagaaaaatcgtcaatcaatcttcaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7014 tttggagaaaactgtgcaagaattgatttcaaaaaagaaaaatcgtcaatcaatcttcaa 6955
Query: 108 ttgtttatttaaagagtaccaatattgaatcaaagagctactttaaattgcttaaaagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6954 ttgtttatttaaagagtaccaatattgaatcaaagagctactttaaattgcttaaaagaa 6895
Query: 168 ctaatggcagaacctcaaatgacggataatgagactacaaggccagaagagtcagaacta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6894 ctaatggcagaacctcaaatgacggataatgagactacaaggccagaagagtcagaacta 6835
Query: 228 gcaactacagtaaagaatctaacagaagaaaatgaagcactctcactagcgcttcatcgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6834 gcaactacagtaaagaatctaacagaagaaaatgaagcactctcactagcgcttcatcgt 6775
Query: 288 actcgtctttctgtgaagagacttagacttgaatacggtgtccttcttgagaggttagaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6774 actcgtctttctgtgaagagacttagacttgaatacggtgtccttcttgagaggttagaa 6715
Query: 348 tccagggtgcatgcagatcagagtttgaagtatgattctccattgcctgatcttgagtcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6714 tccagggtgcatgcagatcagagtttgaagtatgattctccattgcctgatcttgagtcc 6655
Query: 408 tttaggaagtcgttactggagtcaatgccagccagaacccgtaagaagaaagggaagagc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654 tttaggaagtcgttactggagtcaatgccagccagaacccgtaagaagaaagggaagagc 6595
Query: 468 aaagataagagagatcctaatctacccaaaagacctaccaacgcgtatatattattttgc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6594 aaagataagagagatcctaatctacccaaaagacctaccaacgcgtatatattattttgc 6535
Query: 528 gagatgaataaggacaaggtgaaggagatgaatgagaatacggatatgacgagattgatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6534 gagatgaataaggacaaggtgaaggagatgaatgagaatacggatatgacgagattgatg 6475
Query: 588 gctgagatatggaacgggttagatgaagaagcaaaanagccctactacgatctatataac 647
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6474 gctgagatatggaacgggttagatgaagaagcaaaaaagccctactacgatctatataac 6415
Query: 648 gaaggcagacaaaagtacgagcaggaaatgtcaacatattccaag-aaaaggctagccag 706
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6414 gaaggcagacaaaagtacgagcaggaaatgtcaacatattccaagaaaaaggctagccag 6355
Query: 707 gatacggaaaaatatgaatccagttatgcgaatgagaacgagaatgagaatgagaatgag 766
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6354 gatacggaaaataatgaatccagtaatgcgaatgagaacgagaatgagaatgagaatgag 6295
Query: 767 aacgagaacgagaattgaaatgagaaccgac-atgagaacgacgctatggacttgnattc 825
||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||
Sbjct: 6294 aacgagaacgagaatgaaaatgagaa-cgacaatgagaacgacgctatggacttggattc 6236
Query: 826 tgatgtcactcaacccgaaccagaatttgnctactgatcagcccgtatgatga-attgaa 884
||||||||||||||| ||||||| ||||| ||||||||||| ||| |||| || || |||
Sbjct: 6235 tgatgtcactcaaccggaaccag-atttggctactgatcag-ccggatgaagatatggaa 6178
Query: 885 agcgaacc-aatagcgaactgt 905
|||||||| |||||||||||||
Sbjct: 6177 agcgaaccaaatagcgaactgt 6156
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6908
Number of Sequences: 1807
Number of extensions: 6908
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)