BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG07FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1471 0.0
>3x_Contig1776
Length = 26138
Score = 1471 bits (742), Expect = 0.0
Identities = 817/833 (98%), Gaps = 7/833 (0%)
Strand = Plus / Plus
Query: 87 aagaataatgattcgaaatatttcagtccagtctcgctatcacccagtttccctggataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22488 aagaataatgattcgaaatatttcagtccagtctcgctatcacccagtttccctggataa 22547
Query: 147 ttggggaaccatgttctgattggagatctcttcaccttttcttggaaaatatctactttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22548 ttggggaaccatgttctgattggagatctcttcaccttttcttggaaaatatctactttg 22607
Query: 207 tttaagaatagtatgaaaggtgtgttggcaaaccatctagaattcaatagtgtatctaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22608 tttaagaatagtatgaaaggtgtgttggcaaaccatctagaattcaatagtgtatctaat 22667
Query: 267 aatactatcgattcgtgcatacggttcaccctttcatcttcgaataacatttgatcatat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22668 aatactatcgattcgtgcatacggttcaccctttcatcttcgaataacatttgatcatat 22727
Query: 327 tcactaattgctattacaaataccacagcagtaataccttcgaaacaatggatccatttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22728 tcactaattgctattacaaataccacagcagtaataccttcgaaacaatggatccatttt 22787
Query: 387 cttctctcgcttcgttgtcccccagcatcgtaaactttgaacgtgcttggtccaatcttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22788 cttctctcgcttcgttgtcccccagcatcgtaaactttgaacgtgcttggtccaatcttg 22847
Query: 447 aaactgttttcggtgatcccagtggtcttaattcttcctttcaaaatgtccatgtcatca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22848 aaactgttttcggtgatcccagtggtcttaattcttcctttcaaaatgtccatgtcatca 22907
Query: 507 caaacataatcaactcgagcgaatttttcaatgttatcaaaataatacgatgcagatcct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22908 caaacataatcaactcgagcgaatttttcaatgttatcaaaataatacgatgcagatcct 22967
Query: 567 tccaattgaaattcacttgacctattgaaacattgtctgatccccttgtcctgcgtccaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22968 tccaattgaaattcacttgacctattgaaacattgtctgatccccttgtcctgcgtccaa 23027
Query: 627 agctttttgattgcataggcaatttcttcgttggtactttggtctatacgtttcaactct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23028 agctttttgattgcataggcaatttcttcgttggtactttggtctatacgtttcaactct 23087
Query: 687 gaagtctccgaggaaccagtataacttgtcccgggctaa-ttttcactcaagatagcgtc 745
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||
Sbjct: 23088 gaagtctccgaggaaccagtataacttgtccc-ggctaatttttcactcaagaaagcgtc 23146
Query: 746 tgtctcatcctcttcttcangatcagcaccatttgattccttgaaatccagcgtggtttg 805
||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct: 23147 tgtctcatcctcttcttcaggatcagcaccatttgattccttgaatccaagcgtggtttg 23206
Query: 806 cctcttcttccttagatcctatgccccatatatttc-acacatactcgtttaagaactct 864
||||||||| ||||||||||||| || |||||||| ||||||||||||||| |||||||
Sbjct: 23207 cctcttctt-cttagatcctatg-ccattatatttcaacacatactcgtttaggaactct 23264
Query: 865 gaaccacccgccattctggcatcaattctggttcaatgttgttagcacggaag 917
||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 23265 gaaccacccgccattctggcatcaa-tctggtccaatg-tgttagcacggaag 23315
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7459
Number of Sequences: 1807
Number of extensions: 7459
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)