BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG07RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1434 1483 0.0
>3x_Contig1434
Length = 8845
Score = 1483 bits (748), Expect = 0.0
Identities = 820/841 (97%), Gaps = 3/841 (0%)
Strand = Plus / Minus
Query: 48 tgacgtgcccatcaagtttgttgtatttgatgttcgaacagaatctgatttttgttctgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5517 tgacgtgcccatcaagtttgttgtatttgatgttcgaacagaatctgatttttgttctgt 5458
Query: 108 acaattaaatttttcactagagtgaaaaagacctgtagtagtgacagacgttcaaaatga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5457 acaattaaatttttcactagagtgaaaaagacctgtagtagtgacagacgttcaaaatga 5398
Query: 168 tatcacgtgagtcagtttgcattcctatattgtaatgtaatgttacgtacatatagcttc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5397 tatcacgtgagtcagtttgcattcctatattgtaatgtaatgttacgtacatatagcttc 5338
Query: 228 attataattacagtagtgtaccctttgattcatccagggtgatttggtttttattgagaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5337 attataattacagtagtgtaccctttgattcatccagggtgatttggtttttattgagaa 5278
Query: 288 gcgggtttgattcggcacaaagatctagccttgtgcaagcttctagcatgatctctttta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277 gcgggtttgattcggcacaaagatctagccttgtgcaagcttctagcatgatctctttta 5218
Query: 348 agagaaaccatttcttctcaagttgaacagcttctgtataatccttcttaagtttatcat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5217 agagaaaccatttcttctcaagttgaacagcttctgtataatccttcttaagtttatcat 5158
Query: 408 ttagttctgtgagccatttcttctcttccagcagtgtggactcatctaactgtgcatagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5157 ttagttctgtgagccatttcttctcttccagcagtgtggactcatctaactgtgcatagt 5098
Query: 468 ccacgttttccaaagctgggtcttctcttttccatatatcgatatagtcttcgtgcatct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5097 ccacgttttccaaagctgggtcttctcttttccatatatcgatatagtcttcgtgcatct 5038
Query: 528 tattgagtgaatccttatattggatcaacttaagcctgtttaaatcttcaatttcttctc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5037 tattgagtgaatccttatattggatcaacttaagcctgtttaaatcttcaatttcttctc 4978
Query: 588 gctgagctagctgacctggaatatgacgaatcacctcatagtttatctttaacgagtcat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4977 gctgagctagctgacctggaatatgacgaatcacctcatagtttatctttaacgagtcat 4918
Query: 648 caatggctactatatgtcttttgttcccagatttgcgatcctcgtcagcagatgtgtgta 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4917 caatggctactatatgtcttttgttcccagatttgcgatcctcgtcagcagatgtgtgta 4858
Query: 708 gaggagcgttcttattacgagncatggctcgtttctttctttgtacttgtatattcttaa 767
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 4857 gaggagcgttcttataacgagcaatggctcgtttacttctttgtacttgtatattcttaa 4798
Query: 768 ggncttcatgngatctc-ttttgttaattatctgttctgctggcagagccgttacagtca 826
|| |||| |||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4797 ggtcttccatggatctctttttgttaattatctgttctgctgtcagagccgttacagtca 4738
Query: 827 tccctcgggggcttatttgggtttgggggtgtgggggagtttcctttactgctctctttt 886
| |||||| |||||||||| ||||| | |||| | ||||||| |||||||||||| ||||
Sbjct: 4737 t-cctcggtggcttatttgtgtttgtgtgtgt-gtggagttttctttactgctctttttt 4680
Query: 887 g 887
|
Sbjct: 4679 g 4679
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6698
Number of Sequences: 1807
Number of extensions: 6698
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)