BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG08FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1593 1606 0.0
>3x_Contig1593
Length = 10902
Score = 1606 bits (810), Expect = 0.0
Identities = 839/846 (99%), Gaps = 2/846 (0%)
Strand = Plus / Minus
Query: 87 taaatcaagaaacgttattactgtctacaggtacatcgcctcagttgatgcaaactggag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3672 taaatcaagaaacgttattactgtctacaggtacatcgcctcagttgatgcaaactggag 3613
Query: 147 agtttccacttcataagacaagtactaggtcaagcgctcatacctcttcgagcagtatag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3612 agtttccacttcataagacaagtactaggtcaagcgctcatacctcttcgagcagtatag 3553
Query: 207 gaacccggaataaaagtagatccaactctaatgcaatacctcagttcccaacgactgaca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3552 gaacccggaataaaagtagatccaactctaatgcaatacctcagttcccaacgactgaca 3493
Query: 267 actcggttggatcgaatagtggtttaaacgtcagcgtggggctatctaaaaagactagta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3492 actcggttggatcgaatagtggtttaaacgtcagcgtggggctatctaaaaagactagta 3433
Query: 327 acatgtcaaatacaaacagtgccagtatctataacaatgcgaataccacggaggtatcag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3432 acatgtcaaatacaaacagtgccagtatctataacaatgcgaataccacggaggtatcag 3373
Query: 387 ataaacgctttttggatttgaagaagttgattgtggggcaaaatggaaacgaggttgggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3372 ataaacgctttttggatttgaagaagttgattgtggggcaaaatggaaacgaggttgggt 3313
Query: 447 ccaactcatcagatatatcaaccccatctttaagttctcctttggaattgactaatagtc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3312 ccaactcatcagatatatcaaccccatctttaagttctcctttggaattgactaatagtc 3253
Query: 507 cccagtatgaagagatcttgtataacgctccaatggcatcagggtcatcgaatttggcta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3252 cccagtatgaagagatcttgtataacgctccaatggcatcagggtcatcgaatttggcta 3193
Query: 567 tcacaggaagcagaagcaggtctaactccaacattaataccatccaaaactttttctcag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3192 tcacaggaagcagaagcaggtctaactccaacattaataccatccaaaactttttctcag 3133
Query: 627 ggaatagcaaagctcctcgaagttcatttgacgaatcttcagataatcgatccttcacgt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3132 ggaatagcaaagctcctcgaagttcatttgacgaatcttcagataatcgatccttcacgt 3073
Query: 687 cttctgagattaatgtatctaagagggttcctctacttaggagagcttcaagtgctttgc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3072 cttctgagattaatgtatctaagagggttcctctacttaggagagcttcaagtgctttgc 3013
Query: 747 tgatgaaacgctcccttcgacaaagtgccgagaattcacctgatgtaaatacgggacttg 806
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3012 tgaggaaacgctcccttcgacaaagtgccgagaattcacctgatgtaaatacgggacttg 2953
Query: 807 gcattgtatcaccaattaatgatttcaggatggcttcgttggacttggatgctattgctc 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2952 gcattgtatcaccaattaatgatttcaggatggcttcgttggacttggatgctattgctc 2893
Query: 867 gcttaaaaagta-aaac-aggataatctttttatcaatacaaacgacagcggaccgacgc 924
||||| |||||| |||| || | ||||||||||||||||||||||||||| |||||||||
Sbjct: 2892 gcttagaaagtagaaacaagaaaaatctttttatcaatacaaacgacagcagaccgacgc 2833
Query: 925 tatcgt 930
||||||
Sbjct: 2832 tatcgt 2827
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5643
Number of Sequences: 1807
Number of extensions: 5643
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)