BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG09FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig470 1394 0.0
>3x_Contig470
Length = 2866
Score = 1394 bits (703), Expect = 0.0
Identities = 753/763 (98%), Gaps = 5/763 (0%)
Strand = Plus / Minus
Query: 85 cttctcaagtcataaagaccgagggtggagatatcgattccatcgattgtgattttgcct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 cttctcaagtcataaagaccgagggtggagatatcgattccatcgattgtgattttgcct 2555
Query: 145 tcaaaaggttctaaaattctgaataaggctagagtcaatgtactcttaccagcaccggtc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554 tcaaaaggttctaaaattctgaataaggctagagtcaatgtactcttaccagcaccggtc 2495
Query: 205 ctaccgacaacaccaattttttcttgatgcttaatcctcaagtcgatatctttgagaact 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2494 ctaccgacaacaccaattttttcttgatgcttaatcctcaagtcgatatctttgagaact 2435
Query: 265 ggatccaagttttctctgtatttagtagtataatgttcgaatgtaatttcacctctcttg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2434 ggatccaagttttctctgtatttagtagtataatgttcgaatgtaatttcacctctcttg 2375
Query: 325 ggccaattttttggtggcctgctatcttcgatgacccgtataccttcaggcttaaggtca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2374 ggccaattttttggtggcctgctatcttcgatgacccgtataccttcaggcttaaggtca 2315
Query: 385 cgatattcaattattctttccacactaacaatggtggtttcaatgttcactgccattctg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2314 cgatattcaattattctttccacactaacaatggtggtttcaatgttcactgccattctg 2255
Query: 445 atgatccacatcaaagaggaggaaacttgaagagcataactcattaacaaacctatcaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2254 atgatccacatcaaagaggaggaaacttgaagagcataactcattaacaaacctatcaaa 2195
Query: 505 ccagcgctaattggattagaagttccaagtgaagctagcgccattagcgacgtaattagt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 ccagcgctaattggattagaagttccaagtgaagctagcgccattagcgacgtaattagt 2135
Query: 565 acaatcactgcaccgatcgtttgcaaacgcatagataaccatctgttagttgatctgaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2134 acaatcactgcaccgatcgtttgcaaacgcatagataaccatctgttagttgatctgaaa 2075
Query: 625 ttgaaaatgaaattgatgttagtttgaatgttttcaaagttgtaataattgaatatattg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 ttgaaaatgaaattgatgttagtttgaatgttttcaaagttgtaataattgaatatattg 2015
Query: 685 gcgtgtttgtaagcattaatatcatcatgaccacccagggtttcactaagcaatgacatt 744
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 2014 gcgtgtttgtaagcattaataacaacatgaccacccagggtttcactaagcaatgacata 1955
Query: 745 actggagaatatgaaatactagttaatcttcttcaattctctagacaatacaaacgtaaa 804
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 1954 actggagaatatgaaatactagttaatc-tcttcaattctctagacaatac-aacgtaaa 1897
Query: 805 gcgttttgatagttattagtaaataccccaacaaattggtgtt 847
||| |||||||| || ||||||||| ||||||||| |||||||
Sbjct: 1896 gcg-tttgatag-taatagtaaata-cccaacaaaatggtgtt 1857
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7244
Number of Sequences: 1807
Number of extensions: 7244
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)