BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG09RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig744 1306 0.0
>3x_Contig744
Length = 2812
Score = 1306 bits (659), Expect = 0.0
Identities = 738/759 (97%), Gaps = 4/759 (0%)
Strand = Plus / Minus
Query: 48 ctcgatctttgatagcctcgtgtttccatctccacaaaaatcttgtttatctttcgtttc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2468 ctcgatctttgatagcctcgtgtttccatctccacaaaaatcttgtttatctttcgtttc 2409
Query: 108 atctttttttttacctaaatgctgattttcagacatttcatttacatcaa-cagcagttg 166
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2408 atctttttttttacctaaatgctgattttcagacatttcatttacatcaaacagcagttg 2349
Query: 167 cactgctgctgtcgatcttgctttcgtcgataacatttgcagaatgtgcatcacaagtag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2348 cactgctgctgtcgatcttgctttcgtcgataacatttgcagaatgtgcatcacaagtag 2289
Query: 227 ctgagagcggaggcggattgtcaaatccagatctgaccgaagaatacgacaaaatctcca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2288 ctgagagcggaggcggattgtcaaatccagatctgaccgaagaatacgacaaaatctcca 2229
Query: 287 cctcttcactgacaggcttactttcttcgcttttcatagctgacagagtaatgtcattca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2228 cctcttcactgacaggcttactttcttcgcttttcatagctgacagagtaatgtcattca 2169
Query: 347 tgtgataagtagcaaggggttgtgtagcattcttcgttaatttctgcttctctgtaactc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2168 tgtgataagtagcaaggggttgtgtagcattcttcgttaatttctgcttctctgtaactc 2109
Query: 407 tattgggttttgaactgctgccgcgcatcttcgatatggtcgagccagcggatttgatgg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2108 tattgggttttgaactgctgccgcgcatcttcgatatggtcgagccagcggatttgatgg 2049
Query: 467 ttctctttaaccagcctggcctttttggcatgtcaattaaggtaggacaaaacggctcga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2048 ttctctttaaccagcctggcctttttggcatgtcaattaaggtaggacaaaacggctcga 1989
Query: 527 aagacaaaagagtttcattgacaccacttaaatcagttatctcctgcaaatcctgctctt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1988 aagacaaaagagtttcattgacaccacttaaatcagttatctcctgcaaatcctgctctt 1929
Query: 587 catttgtttcgccgttatttgatgtgcctttccgtagtaatctgccgcaaatctttcctt 646
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1928 catttgtttcgccgttatttgatgtgccttccggtagtaatctgccgcaaatctttcctc 1869
Query: 647 cagtatactctatttcatccatttggaatattaattagcaaattttcttgggcttttatg 706
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1868 cagtatactctagttcatccatttggaatattatatagcaaattttcttgggcttttatg 1809
Query: 707 tctattgtattattccaatgaataacaac-tatgaaggacttatcagttgccgggagctt 765
|||| |||||||| |||||||||||||| |||||| |||||||||| | ||| |||||
Sbjct: 1808 tcta-tgtattatcacaatgaataacaacatatgaaagacttatcaggtagcggaagctt 1750
Query: 766 acagttattatgtaggttggcattattcctgaaaccctg 804
|||||||| ||| |||||||||| || | ||||||||||
Sbjct: 1749 acagttataatg-aggttggcatcatacttgaaaccctg 1712
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6833
Number of Sequences: 1807
Number of extensions: 6833
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)