BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG10FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1574 1520 0.0
>3x_Contig1574
Length = 8021
Score = 1520 bits (767), Expect = 0.0
Identities = 826/841 (98%), Gaps = 4/841 (0%)
Strand = Plus / Plus
Query: 86 tgcagacacgtttctttgctgaatccagttgtttattggtgtttaatttcgtgttcagag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165 tgcagacacgtttctttgctgaatccagttgtttattggtgtttaatttcgtgttcagag 3224
Query: 146 tccacagtttccgtggtatctttgttagaagagatagatttactgttgttacaatatttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3225 tccacagtttccgtggtatctttgttagaagagatagatttactgttgttacaatatttc 3284
Query: 206 gataaggaccaattaacgaagcagaagataaataataacctcgatcgattatcgatgctt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3285 gataaggaccaattaacgaagcagaagataaataataacctcgatcgattatcgatgctt 3344
Query: 266 ttccattgtatccttgatgctgggcaaccggtgataacagactcgaaccgtttaaaggca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3345 ttccattgtatccttgatgctgggcaaccggtgataacagactcgaaccgtttaaaggca 3404
Query: 326 atggtcccaagtagaaacgatttatcgaaattgttgaagacgacaaccaatacaattacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3405 atggtcccaagtagaaacgatttatcgaaattgttgaagacgacaaccaatacaattacc 3464
Query: 386 aagaccttacaacaaccggacgggtcaatgtttaagaatggtccggaaaaatcaaggttt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3465 aagaccttacaacaaccggacgggtcaatgtttaagaatggtccggaaaaatcaaggttt 3524
Query: 446 agtggcagtagatatccatcttcatccgcttcatccgtttcctcgttccacgttgggtct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3525 agtggcagtagatatccatcttcatccgcttcatccgtttcctcgttccacgttgggtct 3584
Query: 506 cctggctcctcgttagttgatcattccgttgatgaatctggtgtcccatggagaatgagc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3585 cctggctcctcgttagttgatcattccgttgatgaatctggtgtcccatggagaatgagc 3644
Query: 566 ggcatcaactatgctaataacgaaatattcatcgatatgagtgaggaaattaacgctatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3645 ggcatcaactatgctaataacgaaatattcatcgatatgagtgaggaaattaacgctatt 3704
Query: 626 gtggaaaaggggaaactgttaaccggacatatcaagggttgtatcgacttaaacaaccat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3705 gtggaaaaggggaaactgttaaccggacatatcaagggttgtatcgacttaaacaaccat 3764
Query: 686 ctcagcggacagccattggttgagatgaaacttgggctctttagaccac-agcttagcca 744
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 3765 ctcagcggacagccattggttgagatgaaacttgggctc-ttagaccacaagcttagcca 3823
Query: 745 cttaaacacgactttccatagatgcatcttannagattaagcgaacagcataaatgattt 804
||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 3824 cttaaacacgactttccatagatgcatcttagaggataaggcgaacagcataaatgattt 3883
Query: 805 aatcgctgggaaatttacttagctaacgtttgtacctcctgatggacgtactaggctctg 864
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3884 aatcgctgggaaattcactaagctaacgtttgtacctcctgatggacgtactaggctctg 3943
Query: 865 tccatataccctaccgttggtgaaaaagagactcaaccct-ggctttttagacgtaaatt 923
|| ||||||||||||||||||| ||||||||||||| ||| ||| || ||||||||||||
Sbjct: 3944 tcaatataccctaccgttggtg-aaaagagactcaaacctcggcattatagacgtaaatt 4002
Query: 924 t 924
|
Sbjct: 4003 t 4003
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5332
Number of Sequences: 1807
Number of extensions: 5332
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)