BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG11FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1100 1443 0.0
>3x_Contig1100
Length = 4703
Score = 1443 bits (728), Expect = 0.0
Identities = 807/828 (97%), Gaps = 4/828 (0%)
Strand = Plus / Minus
Query: 87 cgtttttttgtcctgttcgattctgataatttattgaatacgtcctgtgaaaagttataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 cgtttttttgtcctgttcgattctgataatttattgaatacgtcctgtgaaaagttataa 1466
Query: 147 gtattgatttcggtgagatttccttgctgtccactacttttaatttggacttctgaatca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 gtattgatttcggtgagatttccttgctgtccactacttttaatttggacttctgaatca 1406
Query: 207 tttgcttcttcatggaccaaaacagagctcaattccgagagaactcccttcaatccttct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 tttgcttcttcatggaccaaaacagagctcaattccgagagaactcccttcaatccttct 1346
Query: 267 agtctccttttactttccatcatgcagtcatcagtgacaaagatagctcacgcacttttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 agtctccttttactttccatcatgcagtcatcagtgacaaagatagctcacgcacttttc 1286
Query: 327 cacaagtgccaatagagggattgtaatgcgtaataccaaattaaagttatttgcttccgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 cacaagtgccaatagagggattgtaatgcgtaataccaaattaaagttatttgcttccgt 1226
Query: 387 tttactgactatagggcccattaaactcttcaattaaagttgaagatatcttcatggatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 tttactgactatagggcccattaaactcttcaattaaagttgaagatatcttcatggatc 1166
Query: 447 tggagttggcgtagttgaaattattgacgctctaaacacattgtcaataatggtcaaccg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 tggagttggcgtagttgaaattattgacgctctaaacacattgtcaataatggtcaaccg 1106
Query: 507 tacgataaacctggacaccactgtataaataaaagtcctaacatattgaaaatttggcct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 tacgataaacctggacaccactgtataaataaaagtcctaacatattgaaaatttggcct 1046
Query: 567 atgagaactcagaaggagtgcatgattaacgcacttgtatgcagaaaccga-caggtgaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1045 atgagaactcagaaggagtgcatgattaacgcacttgtatgcagaaaccgagcaggtgaa 986
Query: 626 ctctggaaactagaagtatttagaggcacaaatcagtattgagatgcccactgaacttat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 ctctggaaactagaagtatttagaggcacaaatcagtattgagatgcccactgaacttat 926
Query: 686 cacttatgagcagaacttctctttctgtgtagatgctgaaaacgactaccctcctttgga 745
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 925 cacttatgagcagaacttctcttctggtgtagatgctgaaaacgactaccctcctttgga 866
Query: 746 ttccagcatgggcagttttccaagtttctgaacttgaacgtcaaggtgattcacataagc 805
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttccggcatgggcag-tttccaagtttctgaacttgaacgtcaaggtgattcacataagc 807
Query: 806 gtttcgatgatgagatattcgagcttcgagacgaaactctttacggcagatagaaaaaac 865
||| |||||||||||| ||||| ||||||||||||||| |||||||| |||||||||
Sbjct: 806 gttcgaatgatgagatatcggagctccgagacgaaactcttaacggcagagagaaaaaac 747
Query: 866 tatcgacatcgggaaagcttttcga-gaacaatacagggaatgctcaa 912
|| ||||| ||||||| |||||| ||||| ||||||||||||||||
Sbjct: 746 ta-cgacaatcggaaagcatttcgaggaacagtacagggaatgctcaa 700
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5881
Number of Sequences: 1807
Number of extensions: 5881
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)