BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG11RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1511 0.0
>3x_Contig1803
Length = 52241
Score = 1511 bits (762), Expect = 0.0
Identities = 813/826 (98%), Gaps = 3/826 (0%)
Strand = Plus / Minus
Query: 44 gcttctataacaagatctaactgggctttcgatagttcccagaaagctttttccaaatat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26581 gcttctataacaagatctaactgggctttcgatagttcccagaaagctttttccaaatat 26522
Query: 104 ctgacaccaccatgagccatcttggtagatttggaagaagtaccagaagcaaaatcgttc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26521 ctgacaccaccatgagccatcttggtagatttggaagaagtaccagaagcaaaatcgttc 26462
Query: 164 atttcaaccaaggctacgttcaaacctctagtggaagcatccaaagcgcaaccggtacca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26461 atttcaaccaaggctacgttcaaacctctagtggaagcatccaaagcgcaaccggtacca 26402
Query: 224 gtagcaccaccaccgataatcaatacatcaaacttgtccgttttggacaacctagacaaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26401 gtagcaccaccaccgataatcaatacatcaaacttgtccgttttggacaacctagacaaa 26342
Query: 284 agattggctctagatggcaggtctacattagatttcttgatagttgacactgacacatcg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26341 agattggctctagatggcaggtctacattagatttcttgatagttgacactgacacatcg 26282
Query: 344 ttctgcaaagtatttgtatcacgtgactggtttaccatggaaacagcgccaaacactgcg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26281 ttctgcaaagtatttgtatcacgtgactggtttaccatggaaacagcgccaaacactgcg 26222
Query: 404 gcagcagacacagctgatcccagcaaaaccttactggcacgtttagctgcaaacatcgtt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26221 gcagcagacacagctgatcccagcaaaaccttactggcacgtttagctgcaaacatcgtt 26162
Query: 464 tgtaaactgtgagcgtgtgtatgtgtattcgtgtactctcgatattttttggtcctccct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26161 tgtaaactgtgagcgtgtgtatgtgtattcgtgtactctcgatattttttggtcctccct 26102
Query: 524 gtgttcgagtatgtccgtgaatggaagtattatttctaggggaagtggacgcaagtaacg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26101 gtgttcgagtatgtccgtgaatggaagtattatttctaggggaagtggacgcaagtaacg 26042
Query: 584 tgagaataataatatatcagacaggaaaaaaaatacttgatgataattccacccagtttt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26041 tgagaataataatatatcagacaggaaaaaaaatacttgatgataattccacccagtttt 25982
Query: 644 tgaccttttatttttgtaccgcgccaaaaaggactgtcgttcaacgtttgattaagtatt 703
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 25981 tgaccttttattttgtcaccgcgccaaaaaggactgtcgttcaacgtttgattaggtatt 25922
Query: 704 caa-ttaagagtgaatttctcaagttttcgacagatttatcagatttaagtctcttctcc 762
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25921 caatttaagagtgaattcctcaagttttcgacagatttatcagatttaagtctcttctcc 25862
Query: 763 -atataagaaagaattcggatcctttaagtatgtcctaaatttcgactccgatttcgatt 821
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 25861 aatataagaaagaattcgtatcctttaagtatgtcctaaatttcgacttcgatttcgatt 25802
Query: 822 tcaactttattaattttttttttaggaaataatttggaaaaacttc 867
||||||||||||| |||||||||||||||| | || ||||||||||
Sbjct: 25801 tcaactttattaa-tttttttttaggaaattaatttgaaaaacttc 25757
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9258
Number of Sequences: 1807
Number of extensions: 9258
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)