BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG12FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1310 0.0
>3x_Contig1265
Length = 8324
Score = 1310 bits (661), Expect = 0.0
Identities = 782/811 (96%), Gaps = 9/811 (1%)
Strand = Plus / Minus
Query: 85 ccacaccgatagtgtttcctgagagatccaaagaggtaactttgtccatcgatttcaact 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7232 ccacaccgatagtgtttcctgagagatccaaagaggtaactttgtccatcgatttcaact 7173
Query: 145 catcgagaacacttttgatatcttcttcagaagtccatttttgctgtaaaccagccttgc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7172 catcgagaacacttttgatatcttcttcagaagtccatttttgctgtaaaccagccttgc 7113
Query: 205 taaacgacattgttttctattgagaaatgtcagcgatcaggaacaccgagtgagacagat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7112 taaacgacattgttttctattgagaaatgtcagcgatcaggaacaccgagtgagacagat 7053
Query: 265 tcacgagtatttgatactaaatttaggctgtatccgtcatcaatgtcagtttatgggact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7052 tcacgagtatttgatactaaatttaggctgtatccgtcatcaatgtcagtttatgggact 6993
Query: 325 agttaatcaaatttttttctttcttcgattcttcgaggaataaagttgcatcacgtgata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6992 agttaatcaaatttttttctttcttcgattcttcgaggaataaagttgcatcacgtgata 6933
Query: 385 gaacatatttgtaattcgacattcactaccagtgatagagctctggttgtgtggcattac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6932 gaacatatttgtaattcgacattcactaccagtgatagagctctggttgtgtggcattac 6873
Query: 445 acgtttattagtagcatgtacacacgaaatacatattcgaagggtctgagatattatgcc 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6872 acgtttattagtagcatgtacacacgaaatacatattcgaagggtctgagatattaggcc 6813
Query: 505 caataatgaaagtaactacgtaaattaattatgagagaaagcaatgatcattatccatt- 563
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6812 caataatgaaagtaactacgtaaattaattatgagagaaagcaatgatcattatccatta 6753
Query: 564 aaaaattcatttcaaacgaaattggaacggatacgacaggataaataaaagatgacacac 623
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6752 aaaaattcatttcaaacgaaattggaacggatacgacaggataaataaaagaggacacac 6693
Query: 624 aagatatcctgctctttttccttcaactaccgttaaaatcttttaatgaaaagaaaatct 683
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6692 aagatatcctgctctttttccttcaactaccgttaaaatcttttaatgaaagaaaaatct 6633
Query: 684 atttctttggaccgnccataggctcaccattgttcttaccacgcaacttgata-ccaagg 742
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 6632 atttctttggaccgcccaaaggctcaccaatgttcttaccacgcaacttgatacccaagg 6573
Query: 743 cacgcttcatcttaccc-aaatctgctgtttaggaattaccctaccgga-tcataaatcg 800
|||||| |||||||||| |||||||||| |||||||| |||||||||| |||| |||||
Sbjct: 6572 cacgctccatcttacccaaaatctgctggttaggaatacccctaccggattcat-aatcg 6514
Query: 801 ttgacgatagntggccttctcgttaatctta-taaacaagtcccttttgggttagggtct 859
|||||||||| ||| |||||||||||||||| || ||||| |||| || |||||| |||
Sbjct: 6513 ttgacgatagttgg-cttctcgttaatcttagtagccaagt-ccttctgtgttaggttct 6456
Query: 860 tggtcttggctaaccttttgaatagctttac 890
| |||||| ||| |||| |||||||||||||
Sbjct: 6455 t-gtcttgtctacccttctgaatagctttac 6426
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7182
Number of Sequences: 1807
Number of extensions: 7182
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)