BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZG12RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1418 557 e-158
>3x_Contig1418
Length = 8644
Score = 557 bits (281), Expect = e-158
Identities = 343/353 (97%), Gaps = 8/353 (2%)
Strand = Plus / Plus
Query: 368 gctgatttacctctacctctacctgccgtcaatgctacagttgaatttaaagttttctct 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgatttacctctacctctacctgccgtcaatgctacagttgaatttaaagttttctct 60
Query: 428 gaaatggcatcaatgaaggtcaagattgcatgagcttgattaaccgtttttgaaagatca 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 61 gaaatggcatcaatgaaggtcaagattgcatgagcttgattaaccgtttttgaaagagca 120
Query: 488 actaatgatcccgcaggctgaacatcttctaaagacactttcaattcttttagttcttga 547
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actaatgatcccgca-gctgaacatcttctaaagacactttcaattcttttagttcttga 179
Query: 548 ttttttggtgaaatttcttcatcatcctttggtggaagtggttttacgttttttccttca 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 180 ttttttggtgaaatttcttcatcatcctttggtggaagtggttttacgttttttcctcca 239
Query: 608 ga-ataggtaaaacgtttaactcactatctactaccaaacagtttttcattcgaaaccca 666
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 240 gatataggtaaaacgtttaactcactatctactaccaaacag-ttttcattcg-aaccca 297
Query: 667 aggacaagataaatcttttcgttggaatcttgccaccgacattcgtcatgagc 719
||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||
Sbjct: 298 aggacaagataaatc-tttcgtt-gaatcttgcca-cgaca-tcgtcatgagc 346
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8373
Number of Sequences: 1807
Number of extensions: 8373
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)