BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH01FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig431 1199 0.0
3x_Contig1335 198 1e-50
>3x_Contig431
Length = 1757
Score = 1199 bits (605), Expect = 0.0
Identities = 668/681 (98%), Gaps = 6/681 (0%)
Strand = Plus / Plus
Query: 205 tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 64
Query: 265 ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacaaaaagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65 ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacgaaaagt 124
Query: 325 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 184
Query: 385 ataaatatagcgggcgtaataccacccaaggccatacaattacaccccc-aataagattc 443
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 185 ataaatatagcgggcgtaataccacccaaggccatacaattacaccccccaataagattc 244
Query: 444 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 304
Query: 504 agccatcccaacaaatataggcctggaggagtagtgattttcccattccaagagtaccat 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agccatcccaacaaatataggcctggaggagtagtgattttcccattccaagagtaccat 364
Query: 564 tttcctctaagatatcttaacgtttggtcaacatggaacttctcatcaatgaacacataa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttcctctaagatatcttaacgtttggtcaacatggaacttctcatcaatgaacacataa 424
Query: 624 ggaagtccagtagtgttcaatgtatatgccaaataacagaatagtgcagttgcgatgggc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggaagtccagtagtgttcaatgtatatgccaaataacagaatagtgcagttgcgatgggc 484
Query: 684 caaattattacgttcgcataaatcccaaccactacttctctctccacatcccctggaaaa 743
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 485 caaattattacgttcgcataaatcccaaccactacttctctctccacat-ccctggaaaa 543
Query: 744 ctccactaccacagcattcttctcttcagtttcctgatacgctcattatggcagcgtcac 803
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 544 ctccactaccacagcattcttctcttcagttt-ctgatacgctcattatggcagcgtcac 602
Query: 804 tcgggtatcgtttgctagctgttggaacaagatattttcccaactggttcctccatcttg 863
||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||
Sbjct: 603 tcgggtatcgtttgctagctgttgg-acaagaatatttcccaact-gtttctccatcttg 660
Query: 864 tgtttggggatgatatcatac 884
| ||| | |||||||||||||
Sbjct: 661 tattt-gtgatgatatcatac 680
>3x_Contig1335
Length = 8696
Score = 198 bits (100), Expect = 1e-50
Identities = 114/116 (98%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 86 caaataattgttgaaattcaacgtattgaagtttttctcaatcatagcacgacgttccac 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8578 caaataattgttgaaattcaacgtattgaagtttttctcaatcatagcacgacg-tccac 8636
Query: 146 aacaagaatcataattaaaacgttccatacaatattagtctg-tctaaagaggcaa 200
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8637 aacaagaatcataattaaaacgttccatacaatattagtctgttctaaagaggcaa 8692
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6373
Number of Sequences: 1807
Number of extensions: 6373
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)