BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH01RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 1332 0.0
>3x_Contig1250
Length = 5563
Score = 1332 bits (672), Expect = 0.0
Identities = 727/740 (98%), Gaps = 4/740 (0%)
Strand = Plus / Plus
Query: 50 gtatttcgaaattctgtgcactcttagggttttcaaagcagaagaactttgcagagatag 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3150 gtatttcgaaattctgtgcactcttagggttttcaaagcagaagaactttgcagagatag 3209
Query: 110 ccattggattggacattaaattggaaataagttctaatgtcgatctttgaattctgaccg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3210 ccattggattggacattaaattggaaataagttctaatgtcgatctttgaattctgaccg 3269
Query: 170 atgaatccaataagagattctctatactatcccaatactgagcattatttattatgattt 229
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct: 3270 atgaatccaataagagattctctatactatcccaatactgagcattactcaagatgattt 3329
Query: 230 tgccgagatctactccctggtttatagtagccaaatttgtcaacgctaataatgcttcgt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3330 tgccgagatctactccctggtttatagtagccaaatttgtcaacgctaataatgcttcgt 3389
Query: 290 aagtatctaattgtgtgaattgaagttccgataaagcgttgtcatttggtaaaggtaaat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3390 aagtatctaattgtgtgaattgaagttccgataaagcgttgtcatttggtaaaggtaaat 3449
Query: 350 tttcaaataagaacggtgctgcgctcaacggtgaatatttgctgaacgcagtctctggat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3450 tttcaaataagaacggtgctgcgctcaacggtgaatatttgctgaacgcagtctctggat 3509
Query: 410 tcacatagatgagtgttttcgatagtgctcttatcgatagaagataccattcatctttag 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 tcacatagatgagtgttttcgatagtgctcttatcgatagaagataccattcatctttag 3569
Query: 470 aaaggttccttttttgtgctaaaaataccaagagcatcaatccagcaccctgtttcacac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3570 aaaggttccttttttgtgctaaaaataccaagagcatcaatccagcaccctgtttcacac 3629
Query: 530 attctgatatctgtgttttatctcttgtcacattatatatgattcttatggcttgattgt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3630 attctgatatctgtgttttatctcttgtcacattatatatgattcttatggcttgattgt 3689
Query: 590 aagatgaggtggatagttttatcgattttaaagaaccgatcaagtctaaatcgataatat 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3690 aagatgaggtggatagttttatcgattttaaagaaccgatcaagtctaaatcgataatat 3749
Query: 650 aatcacggttaaactcttctatgtccttaacattttccaatgtcgggttcgtcattcctt 709
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 3750 aatcacggttaaactcttctatgtccttaacattttccaatgtc-ggctcgtcatt-ctt 3807
Query: 710 ttcttggttgggttttaaatgaagcttttaatttatcgactggttcctcattctgggacg 769
||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 3808 ttcttggtt-ggttttcaatgaagcttttaatttatcgactgtatcctcattctgtgacg 3866
Query: 770 ggtgcctcacttacgtttgc 789
|||| |||||||||||||||
Sbjct: 3867 ggtg-ctcacttacgtttgc 3885
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7424
Number of Sequences: 1807
Number of extensions: 7424
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)