BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH02FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1576 0.0
>3x_Contig1795
Length = 38452
Score = 1576 bits (795), Expect = 0.0
Identities = 826/835 (98%), Gaps = 1/835 (0%)
Strand = Plus / Plus
Query: 86 tagaacccttcgatacaaacccatccgcgttgcagcagttactactgactatgagataca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tagaacccttcgatacaaacccatccgcgttgcagcagttactactgactatgagataca 307
Query: 146 aattcgtgaccgaggagatagattcgtaccgcatcgtagacactacggcaaattccgtga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aattcgtgaccgaggagatagattcgtaccgcatcgtagacactacggcaaattccgtga 367
Query: 206 aagagatgctaatcaaaaggaaaatcgaatgcgtcagagaatacgtttacggaaccattt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aagagatgctaatcaaaaggaaaatcgaatgcgtcagagaatacgtttacggaaccattt 427
Query: 266 ctgttttcaactctctattcaaatcagaatcaaaattgatacacattgaactgttactcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctgttttcaactctctattcaaatcagaatcaaaattgatacacattgaactgttactcg 487
Query: 326 acgatactacatccaagactgcccatgacttcgaaacgtctcttgctctattgaaattta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acgatactacatccaagactgcccatgacttcgaaacgtctcttgctctattgaaattta 547
Query: 386 taaacgagtgtaccaatttcctcatatcacaactcgaaacccataaatcacaccttaccg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 taaacgagtgtaccaatttcctcatatcacaactcgaaacccataaatcacaccttaccg 607
Query: 446 agtccgtctgtttacaactagtgtattgctctttcagactggcagacgcaaatcaaaact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agtccgtctgtttacaactagtgtattgctctttcagactggcagacgcaaatcaaaact 667
Query: 506 tccatcacttgttcatgaataaactattagaatcaaacctatttacaaaagatgctctca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tccatcacttgttcatgaataaactattagaatcaaacctatttacaaaagatgctctca 727
Query: 566 catcagcaatcacaaagagagtagaattggcaacgaggtattgagcagtgtggctactgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 catcagcaatcacaaagagagtagaattggcaacgaggtattgagcagtgtggctactgt 787
Query: 626 gtggatactgtgcttctaaacttgactatcgcgtataatttaatgtggaatagtggtctt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gtggatactgtgcttctaaacttgactatcgcgtataatttaatgtggaatagtggtctt 847
Query: 686 gtaatttatatagaaaagcctcgcttgttaaaaatcacatcaaactttctacgtaaatta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gtaatttatatagaaaagcctcgcttgttaaaaatcacatcaaactttctacgtaaatta 907
Query: 746 agggttgggtttctatgcattttgctaccggaaaacttcatgatttttcaataaagtttt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 agggttgggtttctatgcattttgctaccggaaaacttcatgatttttcaataaagtttt 967
Query: 806 gactcgcaaacgggacgggaaaaattgaaaaaaagaa-gattcattgatatatacacacc 864
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 968 gactcgcaaacggaacgggaaaaattgaaaaaaagaaggattcattgatatatacacacc 1027
Query: 865 tggggaaatagttgatcctggtttgcaagtgatgtcggcagctcttcgttagcta 919
|||| || ||||||||| | |||||||||||||||| ||||||| |||||||||
Sbjct: 1028 tgggaaattagttgatctggttttgcaagtgatgtcgtcagctctccgttagcta 1082
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6592
Number of Sequences: 1807
Number of extensions: 6592
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)