BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH02RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1075 1384 0.0
>3x_Contig1075
Length = 3835
Score = 1384 bits (698), Expect = 0.0
Identities = 849/890 (95%), Gaps = 8/890 (0%)
Strand = Plus / Plus
Query: 52 gctttacaagaaggcaacctcgatctaccaaaagccttgaaatgagggaaactttatgcc 111
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2009 gctttacaagaaggcaacctcgatcaaccaaaagccttgaaatgagggaaactttatgcc 2068
Query: 112 cagtcaccaggaaaaaggcaactgcctcgtcaggaaagtgttatagtacttaaaattgtg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2069 cagtcaccaggaaaaaggcaactgcctcgtcaggaaagtgttatagtacttaaaattgtg 2128
Query: 172 tcagaatttttatgcagaaagaatgatctagtaatatcataaaaagttgtctgtttattt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2129 tcagaatttttatgcagaaagaatgatctagtaatatcataaaaagttgtctgtttattt 2188
Query: 232 tatatgttgaggatgaatgcacaggaagaagagtcaccaatggatacgcaacaactggcg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2189 tatatgttgaggatgaatgcacaggaagaagagtcaccaatggatacgcaacaactggcg 2248
Query: 292 tacatcgcagcccttaagagagaactcacagctaaggagcaattattgagacagacgata 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2249 tacatcgcagcccttaagagagaactcacagctaaggagcaattattgagacagacgata 2308
Query: 352 caggcatgtaacagagctgaagccaatttaaatacagacgtggtgaattacagagtttgg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2309 caggcatgtaacagagctgaagccaatttaaatacagacgtggtgaattacagagtttgg 2368
Query: 412 gatcaattggcacagaggcagatgtacacttcgagtagatctgatccgattgggattgcg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2369 gatcaattggcacagaggcagatgtacacttcgagtagatctgatccgattgggattgcg 2428
Query: 472 tcattgaagcagagtttgcaagttgacaacaaacaatcaatattcaatgaaacagagcaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2429 tcattgaagcagagtttgcaagttgacaacaaacaatcaatattcaatgaaacagagcaa 2488
Query: 532 tttctagttgagatggtaaataaacagaaacagtttaatgcagatatgtcgtcattgatt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2489 tttctagttgagatggtaaataaacagaaacagtttaatgcagatatgtcgtcattgatt 2548
Query: 592 gtgatgttacaagaacgtcttcgtgatgagaatcaatcacctgataattgccgagatcca 651
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 2549 gtgatgttacaagaacgtcttcgtgatgagaatcaatcacctgaaaatgccggagatcca 2608
Query: 652 attgggatgatttcagaaatgaagtnctanattttcgatctaattcgaaatcatatggcc 711
||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 2609 attggaatgattcaagaaatgaagtctaaaattttcgatctaattcgaaatcatatggcc 2668
Query: 712 gtagacatttncacaccaatatactctgcagatatcgctgctgcagacatgacnaaccta 771
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2669 gtagacatttccacaccaatatactctgcagatatcgctgctgcagacatgacaaacct- 2727
Query: 772 aatgagaa-gttaattaatggtgattcacccct-acagtccattactt-caaccaga-tg 827
|||||||| ||||||||||||||||||| |||| ||||||||| |||| |||||||| ||
Sbjct: 2728 aatgagaaggttaattaatggtgattcaaccctaacagtccatgacttccaaccagattg 2787
Query: 828 gatgattttgttttcgatactggattc-gcgt-tttttttccaaagatagat-tgaattg 884
|||| ||||||| |||||||||| | |||| | | || | |||||||||| ||||| |
Sbjct: 2788 tatgaatttgtttcggatactggatacagcgtatctattacaaaagatagatatgaatgg 2847
Query: 885 gactttttttttgaaattaaaggatttgacttagaacttgtttttatttc 934
|||| | | | |||||||| ||||||||||||||| |||||||| |||||
Sbjct: 2848 gactatatatgtgaaattagaggatttgacttagagcttgttttaatttc 2897
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7230
Number of Sequences: 1807
Number of extensions: 7230
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)