BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH03FM1.SCF screened BAC_end
(991 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1767 1511 0.0
>3x_Contig1767
Length = 23302
Score = 1511 bits (762), Expect = 0.0
Identities = 836/850 (98%), Gaps = 8/850 (0%)
Strand = Plus / Minus
Query: 87 ccaatctttgtagttctcagactttttttctagaaggcaattttccaactttatatctcc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21379 ccaatctttgtagttctcagactttttttctagaaggcaattttccaactttatatctcc 21320
Query: 147 atgtgcaatgaatttagaatgcatatattgtacagcatcaattaattgtaacgctaaggc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21319 atgtgcaatgaatttagaatgcatatattgtacagcatcaattaattgtaacgctaaggc 21260
Query: 207 ggatgtagcttgacacctttctcttaaactaatctttgaattaccacattcgccccaaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21259 ggatgtagcttgacacctttctcttaaactaatctttgaattaccacattcgccccaaga 21200
Query: 267 aacaactaaatcgtataaggttccatgatcgatcttatctgttaaacaatatgccaccag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21199 aacaactaaatcgtataaggttccatgatcgatcttatctgttaaacaatatgccaccag 21140
Query: 327 atcatcgtctaatttccattttgttaaaggaagaatattattgtgggaaagtttcgacca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21139 atcatcgtctaatttccattttgttaaaggaagaatattattgtgggaaagtttcgacca 21080
Query: 387 tattgagatttcacgtagtacttgcctctttacacttcgattgtccttgaacttgataat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21079 tattgagatttcacgtagtacttgcctctttacacttcgattgtccttgaacttgataat 21020
Query: 447 cttcatcgccttgcaacaagtattattctggttttgagattcatctgtagaagggaaaca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21019 cttcatcgccttgcaacaagtattattctggttttgagattcatctgtagaagggaaaca 20960
Query: 507 ttccctgatcataccccaagcgccgaaccctattattttgccaagtctatgacccaaaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20959 ttccctgatcataccccaagcgccgaaccctattattttgccaagtctatgacccaaaat 20900
Query: 567 gaaagaccctttatcgtccctcttgaaagaactagaaccgggggtaaaagagttcaagta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20899 gaaagaccctttatcgtccctcttgaaagaactagaaccgggggtaaaagagttcaagta 20840
Query: 627 tttcgatgcaactgatccatgtctggatctcacgttatgtgttgagccactgtggcttaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20839 tttcgatgcaactgatccatgtctggatctcacgttatgtgttgagccactgtggcttaa 20780
Query: 687 tttctcacgtttcaaaatgttcataatagtcttatagtcatggtttgggacttaaatcct 746
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 20779 tttctcacgtttcaaaatgttcataatagtcttatagtcatgg-ttgggacttaaatcct 20721
Query: 747 gtatgatcttcttacgtt-ggaaaatggcatattgatgaaatccgatggaatagatctca 805
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 20720 gtatgatcttcttacgttgggaaaatggcatattgatgaaatccgatggaatagatctca 20661
Query: 806 taattctatctaagtcatgttctgatatttcaatttggggcaggttgtagttctcagaga 865
|||||||||||| ||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 20660 taattctatctaggtcatgttctgatatttcaattt-gggcagg-tggagttctcagaga 20603
Query: 866 cgattcataaaataaccatgatgaacttcggtcttgcctataggaatttgaaggctgttg 925
|||| || |||||||| ||||||| | ||||||||| ||||||||||||| ||||||||
Sbjct: 20602 cgatgcagaaaataacgatgatgagc-tcggtcttg-ctataggaatttg-aggctgtt- 20547
Query: 926 gctcattttt 935
||||||||||
Sbjct: 20546 gctcattttt 20537
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7042
Number of Sequences: 1807
Number of extensions: 7042
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)