BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH04FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1273 0.0
>3x_Contig1780
Length = 27883
Score = 1273 bits (642), Expect = 0.0
Identities = 708/724 (97%), Gaps = 5/724 (0%)
Strand = Plus / Minus
Query: 87 aagaaagccagattaatttttaggttgaacagaaggttcttgctgattttgattctgagg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aagaaagccagattaatttttaggttgaacagaaggttcttgctgattttgattctgagg 880
Query: 147 ttgaacctgctgagtcgaagaaggcacaccgaaaaacggtgccataggaaacatgaatgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ttgaacctgctgagtcgaagaaggcacaccgaaaaacggtgccataggaaacatgaatgg 820
Query: 207 catgaaaggaactggaggaggaggcatgacttttggctttttgacacctgtttcagcaac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 catgaaaggaactggaggaggaggcatgacttttggctttttgacacctgtttcagcaac 760
Query: 267 aggtgcagcaccagcgacaggttcttcttctaacaatcttttcttattttgctttatgaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aggtgcagcaccagcgacaggttcttcttctaacaatcttttcttattttgctttatgaa 700
Query: 327 ttcctgaacttttctttgtatctcctgtactggttccaatgaatctaataagatatccga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttcctgaacttttctttgtatctcctgtactggttccaatgaatctaataagatatccga 640
Query: 387 tgtttgacaaagaggacaaacgaaatctgattctagtagtgcatcctccatagctagtcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgtttgacaaagaggacaaacgaaatctgattctagtagtgcatcctccatagctagtcg 580
Query: 447 tgaaacgacttttccacaacatttagtacattttacaggatctcgtagcaatccaccagt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgaaacgacttttccacaacatttagtacattttacaggatctcgtagcaatccaccagt 520
Query: 507 taaacaacatttcaactcatccggcaagtctggaaactgtcccttcatatacaatttatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taaacaacatttcaactcatccggcaagtctggaaactgtcccttcatatacaatttatc 460
Query: 567 ctcttgagacatcatataactctgctgntgntgtcttctttgataatcttcccacgaagt 626
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 459 ctcttgagacatcatataactctgctgttgttgtcttctttgataatcttcccacgaagt 400
Query: 627 ttgatctgccatatggactacgaatttcccttcatcagtgaccataattctcttctcagc 686
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 399 ttgatctgccatatggactacgaatttcccttcatcagtgaccataatcttcttctcagc 340
Query: 687 catcttctccggagtcattgaagatggatctatctctatgctttttcaaaaacttcttaa 746
||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 339 catctcctccggagtcatcgaagatggatctatctctatgc-ttttcaaaaacttcttag 281
Query: 747 gaataccgggagtaccttttatttctctttaccctcggaatttaggattattggttggta 806
||||||||| |||| | |||| ||||| |||||||| ||| ||||||||||| |||||||
Sbjct: 280 gaataccggtagta-cgtttaattctc-ttaccctc-gaaattaggattatt-gttggta 225
Query: 807 gggc 810
||||
Sbjct: 224 gggc 221
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6958
Number of Sequences: 1807
Number of extensions: 6958
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)