BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH04RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig939 507 e-143
>3x_Contig939
Length = 3877
Score = 507 bits (256), Expect = e-143
Identities = 277/284 (97%)
Strand = Plus / Minus
Query: 39 cttggacttcttggtcttccgatcttccaaatttttaccgccttcatctttggatttctg 98
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 366 cttggacttcttggtcttccgagcaaccaaatttttaccgccttcatctttggatttctg 307
Query: 99 caaaagttgatagtatgggtcattttccataatcaaataacctctcttttcttcgttaca 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 caaaagttgatagtatgggtcattttccataatcaaataacctctcttttcttcgttaca 247
Query: 159 gtaatattcaatatccttcctctttgtgggtctagcttgtagaggaactcttcctttttt 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 246 gtaatattcaatatccttcctctttgtgggtctagcttgtagaggaactcttccgtactt 187
Query: 219 ttctaggaaccaatgtggtgataaatgggctcttagaccaagacggttgaaataacgagc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttctaggaaccaatgtggtgataaatgggctcttagaccaagacggttgaaataacgagc 127
Query: 279 agtgaaacttccgcctgcatgttcgattgcctcaattgcatcct 322
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 126 agtgaaacttccgcctgcatgttcgattgcctcaatttcatcct 83
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8466
Number of Sequences: 1807
Number of extensions: 8466
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)