BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZH05FM1.SCF screened BAC_end
         (940 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1584                                                        1558   0.0  

>3x_Contig1584 
          Length = 9710

 Score = 1558 bits (786), Expect = 0.0
 Identities = 832/845 (98%), Gaps = 2/845 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   acccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactggatga 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3123 acccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactggatga 3182

                                                                        
Query: 147  ttctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtattgtaaa 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3183 ttctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtattgtaaa 3242

                                                                        
Query: 207  cagcaatgccacaatcatgtccaaatcaaatacacaagaatctcaggcctcaagtgatac 266
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3243 cagcaatgccacaagcatgtccaaatcaaatacacaagaatctcaggcctcaagtgatac 3302

                                                                        
Query: 267  ggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacacaaattt 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3303 ggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacacaaattt 3362

                                                                        
Query: 327  gaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgaccataac 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3363 gaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgaccataac 3422

                                                                        
Query: 387  tgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgagatagcgtttga 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3423 tgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgagatagcgtttga 3482

                                                                        
Query: 447  atacccatttttaatgcatgccttgttagcgtttagcgcaactcatttttctcgtaccga 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3483 atacccatttttaatgcatgccttgttagcgtttagcgcaactcatttttctcgtaccga 3542

                                                                        
Query: 507  gagtggtttggaaagatatgtaacacagcataggttggaagcacttcgattattgagaga 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3543 gagtggtttggaaagatatgtaacacagcataggttggaagcacttcgattattgagaga 3602

                                                                        
Query: 567  agcagtacttgaaattaacgaatccaatacagatgccctatttgcaagcgccattatcct 626
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3603 agcagtacttgaaattaacgaatccaatacagatgccctagttgcaagcgccattatcct 3662

                                                                        
Query: 627  aataatggattccttagctaacgcagccacgcctaccgccagtggagtcaacagcccttt 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3663 aataatggattccttagctaacgcagccacgcctaccgccagtggagtcaacagcccttt 3722

                                                                        
Query: 687  gaatagtggatctatttcaacaagcgcttggattttccacgttaaaggtgcagcaacaat 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3723 gaatagtggatctatttcaacaagcgcttggattttccacgttaaaggtgcagcaacaat 3782

                                                                        
Query: 747  tctaactgctgtatggccgctaactgagaagtcaaggttttataacctgatcaacgtcga 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3783 tctaactgctgtatggccgctaactgagaagtcaaggttttataacctgatcaacgtcga 3842

                                                                        
Query: 807  cttaagtgacttatgagatgtaatcaaccaagaataacgatctatagcagaacttgtatg 866
            ||||||||||||| |||||||||||||||||||| |  ||||||||||||||||||||||
Sbjct: 3843 cttaagtgacttaggagatgtaatcaaccaagaaaacggatctatagcagaacttgtatg 3902

                                                                        
Query: 867  cttttgacgaaagcatcgcatatttatacccctggnagctcatttcaccgtattttgatc 926
            | |||||||||||||||||| |||||||||||  | |||||| ||||||||| |||||||
Sbjct: 3903 c-tttgacgaaagcatcgcagatttataccccgtggagctcaattcaccgta-tttgatc 3960

                 
Query: 927  acact 931
            |||||
Sbjct: 3961 acact 3965


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5249
Number of Sequences: 1807
Number of extensions: 5249
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)