BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH05RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1628 0.0
>3x_Contig1654
Length = 17174
Score = 1628 bits (821), Expect = 0.0
Identities = 867/877 (98%), Gaps = 4/877 (0%)
Strand = Plus / Minus
Query: 43 gctttaatgacccgcttctgtcatctgtatagtacaaccacacaaaaccagaatatattt 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8675 gctttaatgacccgcttctgtcaactgtatagtacaaccacacaaaaccagaatatattt 8616
Query: 103 atatatatatatatatctaattaattccttcattggattccaagttgttctcgcaacctt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8615 atatatatatatatatctaattaattccttcattggattccaagttgttctcgcaacctt 8556
Query: 163 tgattctctagttgcaacatattgatgcggttcgttgctgcttcagactccatttttctt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8555 tgattctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttctt 8496
Query: 223 ctttcacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8495 ctttcacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttc 8436
Query: 283 tctacctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435 tctacctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcg 8376
Query: 343 acatgttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8375 acatgttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaat 8316
Query: 403 tttgcaattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaactta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8315 tttgcaattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaactta 8256
Query: 463 ttgaatgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgcc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8255 ttgaatgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgcc 8196
Query: 523 cttaaatggtccaagagtttagattttataattgttaactgttgtgatcctttatccgca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8195 cttaaatggtccaagagtttagattttataattgttaactgttgtgatcctttatccgca 8136
Query: 583 tctgaaaatttattaacgtgctcccgcagttttataatttcatcttgtaaaatatgatgg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8135 tctgaaaatttattaacgtgctcccgcagttttataatttcatcttgtaaaatatgatgg 8076
Query: 643 tcgttccccaattcttccagttgttcttggagaagctggttatcatccatgtagtatgtc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8075 tcgttccccaattcttccagttgttcttggagaagctggttatcatccatgtagtatgtc 8016
Query: 703 gattttcgcaaagcagttttcaatttcttacggagttccatgacatcttcttctgttcta 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8015 gattttcgcaaagcagttttcaatttcttacggagttccatgacatcttcttctgttcta 7956
Query: 763 gccttcaacatttgcatttgagcttgagcatcaatcagcttttggggaaaggtctttttt 822
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7955 gcctccaacatttgcatttgagcttgagcatcaatcagctttt-gggaaaggtctttttt 7897
Query: 823 ttcatcttgtaaaacttctatcccgagattcatatttcaatccgttgtgtatgccaatct 882
||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||
Sbjct: 7896 ttcatcttgtaaaacttctat-ccgagattcata-ttcaatccgttgtgtatgcc-atct 7840
Query: 883 tgctgaattttcctttaaagacaaactttgttctttg 919
|||||||||||||| ||||| || |||||||||||||
Sbjct: 7839 tgctgaattttcctctaaagtcagactttgttctttg 7803
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,505
Number of Sequences: 1807
Number of extensions: 14505
Number of successful extensions: 1723
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)