BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH06RM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1065 1176 0.0
3x_Contig643 121 3e-27
>3x_Contig1065
Length = 3891
Score = 1176 bits (593), Expect = 0.0
Identities = 603/605 (99%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 45 cttggggacctatagaaagcatataattaaactactcccccgttcgctcaccgtcagcat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3288 cttggggacctatagaaagcatataattaaactactcccccgttcgctcaccgtcagcat 3347
Query: 105 ttcgttttcctgatgtgtgtgtgtattacaactttcagaaaaaatacgaaaagcctgaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3348 ttcgttttcctgatgtgtgtgtgtattacaactttcagaaaaaatacgaaaagcctgaaa 3407
Query: 165 tatatcaaaaagaacatcgactacaccgcaaagaatacagttggaaaagaaagatacttt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3408 tatatcaaaaagaacatcgactacaccgcaaagaatacagttggaaaagaaagatacttc 3467
Query: 225 ataattgtattacactctgttcgtgacagaaaaccatatattgaaattataatggatgtt 284
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3468 a-aattgtattacactctgttcgtgacagaaaaccatatattgaaattataatggatgtt 3526
Query: 285 ttaagcgatctgttagaattagatgcaactgaacttcaactgccagaggattctccatca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3527 ttaagcgatctgttagaattagatgcaactgaacttcaactgccagaggattctccatca 3586
Query: 345 ggtaaagatgataacattgatacttaccgagcctacgttgactcgaccctaaaaaaagaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3587 ggtaaagatgataacattgatacttaccgagcctacgttgactcgaccctaaaaaaagaa 3646
Query: 405 tatcaattacatactgaattcctcaaggaatttgatgatctcatggaaaagaaccaatca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3647 tatcaattacatactgaattcctcaaggaatttgatgatctcatggaaaagaaccaatca 3706
Query: 465 atacgtacctctactgagacacttataccgagtttgaaaaattactttgccgaatttaac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3707 atacgtacctctactgagacacttataccgagtttgaaaaattactttgccgaatttaac 3766
Query: 525 aacaagttgaacgatttgactaaagatctcgatttcgttaagggtaaattttctgagttt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3767 aacaagttgaacgatttgactaaagatctcgatttcgttaagggtaaattttctgagttt 3826
Query: 585 tcatcgttactgaagagtaactcttcgaagttgaaagacataagtcccatcgttaatgat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3827 tcatcgttactgaagagtaactcttcgaagttgaaagacataagtcccatcgttaatgat 3886
Query: 645 ttgat 649
|||||
Sbjct: 3887 ttgat 3891
>3x_Contig643
Length = 2667
Score = 121 bits (61), Expect = 3e-27
Identities = 144/169 (85%), Gaps = 2/169 (1%)
Strand = Plus / Plus
Query: 597 aagagtaactcttcgaagttgaaagacataagtcccatcgttaatgatttgataatctct 656
||||||||| ||||||||||||||||| |||| ||| | ||| || |||| ||||||
Sbjct: 73 aagagtaacgtttcgaagttgaaagacagaagttccagtggtaaggagttgagaatctcg 132
Query: 657 cctgaaata-tatat-caagtgttaagaggcaagattgatcaaaaatggattgattgtat 714
|| |||| | || || |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 133 ccggaaagaatagattcaagtgttaagaggcaagattgatcaaaaagggattgattgtat 192
Query: 715 tgattatttgaacgataaacaagagatattcctgaagtttcaagaagaa 763
||||| |||||||||| | ||||||| | ||| |||| ||||||||||
Sbjct: 193 tgattttttgaacgattatcaagagagagtccgtaagtatcaagaagaa 241
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9466
Number of Sequences: 1807
Number of extensions: 9466
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 2
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)