BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH07FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1798 1409 0.0
>3x_Contig1798
Length = 38968
Score = 1409 bits (711), Expect = 0.0
Identities = 817/843 (96%), Gaps = 7/843 (0%)
Strand = Plus / Minus
Query: 85 tgtgttacctctgtaggaatttatataaactatatatagcgatgctttgaagcgccagat 144
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5394 tgtgttacctctgtaggaatttatataaactatatatagcgatgctt-gaagcgccagat 5336
Query: 145 gaacgatcctgtacatcacgtgaacaaagtgaggcaagatcataaaaccagtagctactg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5335 gaacgatcctgtacatcacgtgaacaaagtgaggcaagatcataaaaccagtagctactg 5276
Query: 205 tcacgagctgtacataacgcaaccagtttttcgtcaaatatcgtccatctctgtctctgt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5275 tcacgagctgtacataacgcaaccagtttttcgtcaaatatcgtccatctctgtctctgt 5216
Query: 265 ttatatcatcagaaccattgatctcttctatttgactcatctaaaaattcgcacttaaat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5215 ttatatcatcagaaccattgatctcttctatttgactcatctaaaaattcgcacttaaat 5156
Query: 325 catgcatacgcgtgactaccagcatcatgtttgtgctttgctttcagtatgtgacattga 384
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5155 ca-gcatacgcgtgactaccagcatcatgtttgtgctttgctttcagtatgtgacattga 5097
Query: 385 tttgagcgaaaaatatatatgcgaacaaaaagacatataaagaaaggaaaggatttatga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5096 tttgagcgaaaaatatatatgcgaacaaaaagacatataaagaaaggaaaggatttatga 5037
Query: 445 agggatatagttggtatttacttggctgaaggcacacatcatgtatctttccaaatttcg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5036 agggatatagttggtatttacttggctgaaggcacacatcatgtatctttccaaatttcg 4977
Query: 505 acacatacacctcttcttgtgtaaggaatatggttggagtgtgagtcaacaatatcaggg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4976 acacatacacctcttcttgtgtaaggaatatggttggagtgtgagtcaacaatatcaggg 4917
Query: 565 caagagggtgaaggtgatttaatccagagtctgtttaattttctaattccccttgagtat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4916 caagagggtgaaggtgatttaatccagagtctgtttaattttctaattccccttgggtat 4857
Query: 625 ccggcatagagatgaaatttgctgagcacctccgagagtctgtagttcctgaatggagcg 684
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4856 ccggcaaagagatgaaatttgctgagcacctccgagagtctgtagttcctgaatggagcg 4797
Query: 685 atcagtatgttaactataaactcggtaagaaaaagattaagcagttccataaattgaaaa 744
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4796 ataagtatgttaactataaactcggtaagaaaaagattaagcagttccaaaaattgaaaa 4737
Query: 745 aggttcaagatgttggatccatggatcgtactattgttcgtgaattcattgatgattggc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4736 aggttcaagatgttggatccatggatcgtactattgttcgtgaattcattgatgattggc 4677
Query: 805 ttgtgcgata-cagtttgagaacctggatga-ttttattaatgggcactctcttaattca 862
|||||||| | ||||| ||||| ||||| |||||| ||||| ||||||| ||| ||
Sbjct: 4676 ttgtgcgagatcagttgaagaactgcgatgagttttatgaatggcaactctctaaataca 4617
Query: 863 gagct-aatttcataaattgcaagaggccgatccttttgcatgtgcttggaagcagataa 921
||||| ||| ||||||||||| |||||| ||||| |||| |||||| |||||||||||||
Sbjct: 4616 gagctaaatatcataaattgc-agaggcagatccatttgtatgtgc-tggaagcagataa 4559
Query: 922 gcg 924
|||
Sbjct: 4558 gcg 4556
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6476
Number of Sequences: 1807
Number of extensions: 6476
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)