BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH07RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1356 0.0
>3x_Contig1799
Length = 39855
Score = 1356 bits (684), Expect = 0.0
Identities = 722/732 (98%), Gaps = 2/732 (0%)
Strand = Plus / Minus
Query: 42 ctttcggtattcatcctttgacttttgaagatatcttcttaggtgaggttcgtgaaaagg 101
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18439 ctttcggtattcatcctttgactactgaagatatcttcttaggtgaggttcgtgaaaagg 18380
Query: 102 ttgagctctttaaagattattatttggtttgttttagaagttttgatattgtcgctgaaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18379 ttgagctctttaaagattattatttggtttgttttagaagttttgatattgtcgctgaaa 18320
Query: 162 gacacatcaggaggaagaaacaacaacagcaacaaaaacaatcagattccgaattctgtg 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 18319 gacacatcaggaggaagaaacaacaacagcaacaaaaacaatcagattccgaatccagtg 18260
Query: 222 actctgatgatggatccccacaaggcggttggattaaaaatttgttcaagagaaaacgca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18259 actctgatgatggatccccacaaggcggttggattaaaaatttgttcaagagaaaacgca 18200
Query: 282 ggtcgtctgcgtgcaaaacgatcagctcttccaactctagtgttaagagaaaggcgagaa 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18199 ggtcgtctgcgtgcaaaacgatcagctcttccaactctagtgttaagagaaaggcgagaa 18140
Query: 342 aggagaaagaagaaattgaaaagtataagcggaaatctggtgatcgtcgaaagcctcgtg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18139 aggagaaagaagaaattgaaaagtataagcggaaatctggtgatcgtcgaaagcctcgtg 18080
Query: 402 caggtgaattagaaccactaaatgtgtatattctagtgtttcggactggagtgctcactt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18079 caggtgaattagaaccactaaatgtgtatattctagtgtttcggactggagtgctcactt 18020
Query: 462 tccattttgctccaacgcctcatcccatcaacgttagaagaagagcaagattgttaaaag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18019 tccattttgctccaacgcctcatcccatcaacgttagaagaagagcaagattgttaaaag 17960
Query: 522 attatttgaatgttacagcagattggattgcgtacgctttaatcgatgatatcaccgatg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17959 attatttgaatgttacagcagattggattgcgtacgctttaatcgatgatatcaccgatg 17900
Query: 582 cttttgcacctatgatcgagctcatagaggatgaagtgtatgatatcgaagatgccatat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17899 cttttgcacctatgatcgagctcatagaggatgaagtgtatgatatcgaagatgccatat 17840
Query: 642 taaacatgcatcacaccactgattcaagtgactcggattcatgatcggattcagaatctg 701
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 17839 taaacatgcatcacaccactgattcaagtgactcggattcaggatcggattcagaatctg 17780
Query: 702 actcggatgacgatgattatagcctgtatcatttttgatagagcctcgaaaattaccaca 761
||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||
Sbjct: 17779 actcggatgacgatgataatagcctgtatca-ttttgatagagcttcgaaaaataccaca 17721
Query: 762 tttctcgagact 773
|||||||||||
Sbjct: 17720 -ttctcgagact 17710
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8665
Number of Sequences: 1807
Number of extensions: 8665
Number of successful extensions: 129
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)