BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH08RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 1618 0.0
>3x_Contig1142
Length = 5741
Score = 1618 bits (816), Expect = 0.0
Identities = 876/892 (98%), Gaps = 3/892 (0%)
Strand = Plus / Minus
Query: 45 ctttgaaatcatctttgtttaaatgatccaaaaaatcgtccattaccaaggcttcctttg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 ctttgaaatcatctttgtttaaatgatccaaaaaatcgtccattaccaaggcttcctttg 1090
Query: 105 aattttttgcatcttcaagcttatgtttataagccggatcctttaatacctcatctatac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 aattttttgcatcttcaagcttatgtttataagccggatcctttaatacctcatctatac 1030
Query: 165 cttgtaagtatcctgtagagcaatgtgcgaccaaaaacttgccagtatttgcaaggattt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 cttgtaagtatcctgtagagcaatgtgcgaccaaaaacttgccagtatttgcaaggattt 970
Query: 225 ttttattctgatcttcttgtgcatattgcattaccttgtcatataaagtctttgcgtaaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 ttttattctgatcttcttgtgcatattgcattaccttgtcatataaagtctttgcgtaaa 910
Query: 285 accctggtgaacaaattatgatgcatttcagtgtgtcaaaatcgaaatgtctaaccatgg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 accctggtgaacaaattatgatgcatttcagtgtgtcaaaatcgaaatgtctaaccatgg 850
Query: 345 acgcataagtggctctgtaaaatttctctaccttgtcatcaaacttcattatatctgtac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 acgcataagtggctctgtaaaatttctctaccttgtcatcaaacttcattatatctgtac 790
Query: 405 ctctcttcttctttggaatgctatattcgatcttatgctttaataccgtagagaatgaat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctctcttcttctttggaatgctatattcgatcttatgctttaataccgtagagaatgaat 730
Query: 465 tgatcaagcaaatgtgggaaataccttcttgtaagacaacagctgccatatcagaacgac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgatcaagcaaatgtgggaaataccttcttgtaagacaacagctgccatatcagaacgac 670
Query: 525 cctcaatattacaagcttgttttacgagattatccacgtatgaattgtaatcatctttga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cctcaatattacaagcttgttttacgagattatccacgtatgaattgtaatcatctttga 610
Query: 585 tcaatgtgaatgggtaagagaaatcgatggtgaaactgaagaa-ttacccactggcaaat 643
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 609 tcaatgtgaatgggtaagagaaatcgatggtgaaactgaagaatttacccactggcaaat 550
Query: 644 cctggttagcattcgaataatcatcttccgtagtgacacctttataccttagaaattcat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cctggttagcattcgaataatcatcttccgtagtgacacctttataccttagaaattcat 490
Query: 704 gttgaggctcaaactctgaagagacgactttgattctcaatttttcaagctgtgtcgctt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gttgaggctcaaactctgaagagacgactttgattctcaatttttcaagctgtgtcgctt 430
Query: 764 tctttcttaccccctttctctgtcttggatgtgactttcttctttaagatgatctcatca 823
|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 429 tc-ttcttacccccttcctctgtcttggatgtgactttcttcttaaagatgatctcatca 371
Query: 824 tcagtattgataatgttgtacagtgtgaataaatcctttttttcctgaggtttgaaagtc 883
||||||||||||||||||||||||||||||||||| | ||| |||||||||| | ||||
Sbjct: 370 tcagtattgataatgttgtacagtgtgaataaatcttctttatcctgaggttgaagagtc 311
Query: 884 aaaatggcttttttcccacttggtgaaacggttcactttattgattaacctc 935
||||||||| ||| |||||| ||||| ||| ||||||||||||||||||||
Sbjct: 310 aaaatggctctttccccactgtgtgaaccgg-tcactttattgattaacctc 260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8548
Number of Sequences: 1807
Number of extensions: 8548
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)