BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH09FM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1608 0.0
>3x_Contig1749
Length = 22923
Score = 1608 bits (811), Expect = 0.0
Identities = 856/870 (98%), Gaps = 1/870 (0%)
Strand = Plus / Plus
Query: 91 cgtaccaaatcccattgctctgcagtggtaagcatatgtttcgaaagtaagtaatcaaat 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21231 cgtaccaaatcccattgctctgcagtggtaagcatatgtttcgaaagtaagtaatcaaat 21290
Query: 151 gcctcgtaatttttaacgtcaacttgcactgcttctttaaagcattctttggcctgttcc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21291 gcctcgtaatttttaacgtcaacttgcactgcttctttaaagcattctttggcctgttcc 21350
Query: 211 atgttactaagggagacgtatattctgcctcttaacaaacacattgacgattcgagcttt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21351 atgttactaagggagacgtatattctgcctcttaacaaacacattgacgattcgagcttt 21410
Query: 271 acaccaccatctgcattccctggagaggacggttcactttgaaacgggttcgtgtctccg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21411 acaccaccatctgcattccctggagaggacggttcactttgaaacgggttcgtgtctccg 21470
Query: 331 atgatatcaagtgcctcttcaagtttgtttaatttgaaaagacataatgctgccaagtag 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21471 atgatatcaagtgcctcttcaagtttgtttaatttgaaaagacataatgctgccaagtag 21530
Query: 391 cggcacattatgctttccgaatccaattgatccgtaaatattagttccacggctcgcacg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21531 cggcacattatgctttccgaatccaattgatccgtaaatattagttccacggctcgcacg 21590
Query: 451 taagatccttgattgtaatacacttgtgccaaccaaaaggcatcgttgggatcctttgtc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21591 taagatccttgattgtaatacacttgtgccaaccaaaaggcatcgttgggatcctttgtc 21650
Query: 511 attgaatagatgagatcaccgatgtgttcggcagttttataatggtgttgcatcaaggca 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21651 attgaatagatgagatcaccgatgtgttcggcagttttataatggtgttgcatcaaggca 21710
Query: 571 tcgtgcctccaaagccgtagtttctctacagatgaaagatcgctaacatcgaatacatta 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21711 tcgtgcctccaaagccgtagtttctctacagatgaaagatcgctaacatcgaatacatta 21770
Query: 631 tcgctggcatggtctatatcttcgtcattcgtagaattgtttagctcaacagtgtccgtc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21771 tcgctggcatggtctatatcttcgtcattcgtagaattgtttagctcaacagtgtccgtc 21830
Query: 691 gatgtactagtttttcttaaagtagacggcagtgccagtccaaataatccattctttgtc 750
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 21831 gatgtactagtttttcttaaagtagacggcagtgccggtccaaataatccattctttgtc 21890
Query: 751 atcgacgctaatagactagatcctgcagtaccattgtgcctcataacggcaagagttgct 810
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 21891 atcgacgctaatagactagatcctgcagtaccattgtgcctcataacggcaggagttgct 21950
Query: 811 aaatgggatacatctcttatcttctgcactaaaagacttctatcttgatgccgagtctgt 870
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 21951 aaatgggatacatctcttatcttctgcactaaaggacttctatcttgatgcggagtctgt 22010
Query: 871 gcgatctgcngtatgttgctttgcccaactttcacgttcctttcctgaaaaatcccntat 930
||||||||| ||||||||||| ||||| ||| ||||||||| | ||| || |||| |||
Sbjct: 22011 gcgatctgcggtatgttgcttcgcccaccttcaacgttccttccttgagaattccc-tat 22069
Query: 931 tggatcattcctattcatactacctctgtt 960
||||||||||||||||||||||||||||||
Sbjct: 22070 tggatcattcctattcatactacctctgtt 22099
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5605
Number of Sequences: 1807
Number of extensions: 5605
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)