BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH10FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig903 1413 0.0
>3x_Contig903
Length = 4000
Score = 1413 bits (713), Expect = 0.0
Identities = 829/859 (96%), Gaps = 7/859 (0%)
Strand = Plus / Plus
Query: 86 aaatacttgtactatgaattgttccgtgatacatttgagaaggtggacaaattgttaacg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2682 aaatacttgtactatgaattgttccgtgatacatttgagaaggtggacaaattgttaacg 2741
Query: 146 caagaattgcacagccttccaccatgggcagctcccatagtcaaagatatgagaaagtcc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2742 caagaattgcacagccttccaccatgggcagctcccatagtcaaagatatgagaaagtcc 2801
Query: 206 aacttgaaaactaacaggaaaataatgactaacagactgtactttaacctatt-attgga 264
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2802 aacttgaaaactaacaggaaaataatgactaacagactgtactttaacctatttattgga 2861
Query: 265 cgtttacagaccctggaatttctttacagacaacacgcttatgagatacgttgtgccaaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 cgtttacagaccctggaatttctttacagacaacacgcttatgagatacgttgtgccaaa 2921
Query: 325 cccaagaacggacaacatcatccttggtatactgaagaactgcctattgttcgttttact 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2922 cccaagaacggacaacatcatccttggtatactgaagaactgcctattgttcgttttact 2981
Query: 385 atttgtaccaaactgtgagagacaattcgaagagattatcgaggaacggttgatcgagca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2982 atttgtaccaaactgtgagagacaattcgaagagattatcgaggaacggttgatcgagca 3041
Query: 445 atcccaggaagaggaacacgttcaacttgcctagtgccccaattctagaatctaggagct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3042 atcccaggaagaggaacacgttcaacttgcctagtgccccaattctagaatctaggagct 3101
Query: 505 taaaaacgattctaaatctaaaattcaatccaaatctatacactatgtatctatgtattg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3102 taaaaacgattctaaatctaaaattcaatccaaatctatacactatgtatctatgtattg 3161
Query: 565 tgtctggccccatatacaatgtaaaaaattagtaacaccagtgagataggcgagaccata 624
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3162 tgtctggccccatatacaatgtaaaaaattagtaacaccagtgagaaaggcgagaccata 3221
Query: 625 ccgatacgttagtaaaaacaaactctcaacacccaaaacctctaaactaccactactgaa 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3222 ccgatacgttagtaaaaacaaactctcaacacccaaaacctctaaactaccactactgaa 3281
Query: 685 aagtttcttcacgaccttctctcaatattgcaacggtctttctttattcngacatctcag 744
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3282 aagtttcttcacgaccttctctcaatattgcaacggtctttctttattcggacatctcag 3341
Query: 745 atcaagacagtagcacctttaagggcgaaagatttccagattctt-caaattctgacaaa 803
||||||||||||||||||| |||||||||||| ||||||| |||| | ||||||||||||
Sbjct: 3342 atcaagacagtagcaccttaaagggcgaaagagttccagaatcttcccaattctgacaaa 3401
Query: 804 atgaattttaaatcagttccggttaacattataaaccggtgttctttatctatttgaagg 863
||||||| ||||||| ||||| |||||||||||||||||| || |||||| ||| |||
Sbjct: 3402 atgaattataaatcaagtccgggtaacattataaaccggtg-tccttatctcattggagg 3460
Query: 864 cgctttgcacatgcccttttccccagntatagacattatccacctggcaacctatggcaa 923
||| |||||||||||| ||||||||| | |||||||| ||| || |||||||| ||||
Sbjct: 3461 cgc-ttgcacatgccc-tttccccagg-aaagacattagccaact-gcaacctagtgcaa 3516
Query: 924 ccgggctcaacagccagct 942
| |||||| |||||||||
Sbjct: 3517 actggctcagcagccagct 3535
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5760
Number of Sequences: 1807
Number of extensions: 5760
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)