BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH10RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig967 1249 0.0
>3x_Contig967
Length = 3110
Score = 1249 bits (630), Expect = 0.0
Identities = 721/746 (96%), Gaps = 4/746 (0%)
Strand = Plus / Minus
Query: 54 ctttaaaacgtatgctaagaccgtggaatctttacctccagaagcaccgactgcaatacg 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ctttaaaacgtatgctaagaccgtggaatctttacctccagaagcaccgactgcaatacg 706
Query: 114 ttcgcctcggtgaaaaaggttgtttgatacaatggtgttatgtatttctgtctcgaatac 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttcgcctcggtgaaaaaggttgtttgatacaatggtgttatgtatttctgtctcgaatac 646
Query: 174 agagaagaaacactctttacagatccgttgtaaattcttcggtcttttcatcactgtctt 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 645 agagaagaaacactctttacagatccgttgtaaattcttcggtcttttcatcactgcctg 586
Query: 234 tctcgcatggcatagttcacagagctgtgagacctttaccttgacggatttcttcggatc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tctcgcatggcatagttcacagagctgtgagacctttaccttgacggatttcttcggatc 526
Query: 294 agtcggtggtgtaaacatggagacttgatttgtctgactgtatagcggtgtgttacacga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agtcggtggtgtaaacatggagacttgatttgtctgactgtatagcggtgtgttacacga 466
Query: 354 taatgggatgtttttggctgtttcataaacaatgatcttatcttctactcatctcgatga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 taatgggatgtttttggctgtttcataaacaatgatcttatcttctactcatctcgatga 406
Query: 414 agttgaccattgggatgcataaaatctttcaaaagaaattctacatagcgctgtcacatt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agttgaccattgggatgcataaaatctttcaaaagaaattctacatagcgctgtcacatt 346
Query: 474 tgcgggtaacagtaaatatgtactgtcgatttttgatataatgaaagtgacacaccgtaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgcgggtaacagtaaatatgtactgtcgatttttgatataatgaaagtgacacaccgtaa 286
Query: 534 tcgctggtttaagactggagattcgacaagtgaagatcacttgagggtactatgtattgt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tcgctggtttaagactggagattcgacaagtgaagatcacttgagggtactatgtattgt 226
Query: 594 atgtacttaaccccttcattt-acatagcgaattcaattttgaaaccttactgat-ttaa 651
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct: 225 atgtacttaaccccttcatttaacatagcgaattcaattttgaaaccttactgatataaa 166
Query: 652 ttaccatttacacttttattcttttttgc-agagaaagtacatttacgttccaaaattct 710
||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||| |
Sbjct: 165 ttaccatttacacttttattcttttttgcaagagaaagtacattcacgtacaaaaatcat 106
Query: 711 ttttgat-acattatcccttacttcgttaccggcaattcttgcaattttttttcaaaccc 769
| ||| |||| || ||||| ||||||||| |||||||||||| | ||||||| || |
Sbjct: 105 aatagataacatagtcgcttacatcgttaccgtcaattcttgcaaatatttttcagacgc 46
Query: 770 gtacttattttaatgctttcactctt 795
|||||||| |||||||||||||||||
Sbjct: 45 gtacttatattaatgctttcactctt 20
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8985
Number of Sequences: 1807
Number of extensions: 8985
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)