BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZH11RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1665 0.0
>3x_Contig1281
Length = 7825
Score = 1665 bits (840), Expect = 0.0
Identities = 886/896 (98%), Gaps = 4/896 (0%)
Strand = Plus / Minus
Query: 45 ctttcaaagacat-aatgcttgcacttttaggacttattgcaattgttattatcatagtt 103
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3977 ctttcaaagacatcaatgcttgcacttttaggacttattgcaattgttattatcatagtt 3918
Query: 104 gttaaagctccactagtaagcggcgaatataaaggaactttccatttacatcagttgttt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3917 gttaaagctccactagtaagcggcgaatataaaggaactttccatttacatcagttgttt 3858
Query: 164 attacaccaaggatatttcaaggcatttctgtgatttcatttgcgttagtatgccatcac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3857 attacaccaaggatatttcaaggcatttctgtgatttcatttgcgttagtatgccatcac 3798
Query: 224 aacacgagttttatatttttctcgttgagaaatccctctttaaaaagatttaatcagttg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797 aacacgagttttatatttttctcgttgagaaatccctctttaaaaagatttaatcagttg 3738
Query: 284 acacatgtcagtttaattctttcttgcatcgtttgcttaacaactgcttactctgggttc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3737 acacatgtcagtttaattctttcttgcatcgtttgcttaacaactgcttactctgggttc 3678
Query: 344 cttaactttaaagacaaaacagtgggtaatattcttaataatttcccttctgatgataat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3677 cttaactttaaagacaaaacagtgggtaatattcttaataatttcccttctgatgataat 3618
Query: 404 gtgattaattttgccagacttcttttgggatttaacatgcttactacgtttcctttggaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3617 gtgattaattttgccagacttcttttgggatttaacatgcttactacgtttcctttggaa 3558
Query: 464 atcttcgttttgagagatgtgataagggacataatatattacaacaaagacgaccctgaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3557 atcttcgttttgagagatgtgataagggacataatatattacaacaaagacgaccctgaa 3498
Query: 524 ccagtaaagttaacgacaaaaatgcatgccctcataacgtctggtttagttttgattata 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3497 ccagtaaagttaacgacaaaaatgcatgccctcataacgtctggtttagttttgattata 3438
Query: 584 atgtgtatcgctttatcaacttctaatcttggtgcacttctagaaatcattggagcaaca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3437 atgtgtatcgctttatcaacttctaatcttggtgcacttctagaaatcattggagcaaca 3378
Query: 644 agcgcttctctcatggcatatatacttcctccactcactaatttggttataacaggaaaa 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3377 agcgcttctctcatggcatatatacttcctccactcactaatttggttataacaggaaaa 3318
Query: 704 aaaaaatccttgaaagataagttaccttattgcggttgtattgtatttggtgttatactc 763
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3317 aaaaaatccttgaaagaaaagttaccttattgcggttgtattgtatttggtgttatactc 3258
Query: 764 atgttcgtgagcaccgctcaaactatattagaagcgtttgcgtaaaatctatagcactat 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3257 atgttcgtgagcaccgctcaaactatattagaagcgtttgcgtaaaatctatagcactat 3198
Query: 824 gtatgtagcagctgggttagctaatattctgtatctgattctatgcgtgggctttttacg 883
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3197 gtatgtagcagctgtgttagctaatattctgtatctgattctatgcgt-ggctttttacg 3139
Query: 884 ctttcgttgtttccgaaattactttctttcttaagtggatgtgaagagtattcttc 939
||||||||| ||||||| |||| ||||| || |||||||||||| |||||||||||
Sbjct: 3138 ctttcgttg-ttccgaagttac-ttcttcctcaagtggatgtgatgagtattcttc 3085
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8350
Number of Sequences: 1807
Number of extensions: 8350
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)