BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA01FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig834 864 0.0
>3x_Contig834
Length = 2891
Score = 864 bits (436), Expect = 0.0
Identities = 460/468 (98%)
Strand = Plus / Minus
Query: 73 cttttatcaaaaatgggttacaaacaaggtgaaggtttaggacgagatgggaaaggtata 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1919 cttttatcaaaaatgggttacaaacaaggtgaaggtttaggacgagatgggaaaggtata 1860
Query: 133 gtgaacccaatcgaaacagtcactcgtcctaaaggtgtcggattagggatgttaagtgca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1859 gtgaacccaatcgaaacagtcactcgtcctaaaggtgtcggattagggatgttaagtgca 1800
Query: 193 gtacatgatagagatgacttcttctatagtaatacttcagcatcatcagatgaaagttca 252
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 1799 gtacatgatagagatgactccaactatagtaatacttcagcatcatcagatgaaagttca 1740
Query: 253 aataaaaagaaaacagtggagtttaagactcgtcgtgccacccagcttgagaaattgatt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 aataaaaagaaaacagtggagtttaagactcgtcgtgccacccagcttgagaaattgatt 1680
Query: 313 caaaatataagtctccttgcggaattaaaaatagaactacctgatacggtgacaagaaca 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 caaaatataagtctccttgcggaattaaaaatagaactacctgatacggtgacaagaaca 1620
Query: 373 atcaatggttctgaattacatgaagaagagatttcctctttgaatgaaattgctaataag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 atcaatggttctgaattacatgaagaagagatttcctctttgaatgaaattgctaataag 1560
Query: 433 cttctgcagcttcattcggacatagatagaatacaagttggcttggaaaaagcttaacta 492
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1559 cttctgcagcttcattcggacatagatagaatacaagttggcttggaaaaagctcaacta 1500
Query: 493 gatgacgagcgcaaagttcaccaagaggaatggctacatattgtttta 540
||||||||||||||||| |||||||||||| ||||||| | |||||||
Sbjct: 1499 gatgacgagcgcaaagtacaccaagaggaaaggctacaaagtgtttta 1452
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8161
Number of Sequences: 1807
Number of extensions: 8161
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)