BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA01RM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1430 551 e-157
3x_Contig1543 363 e-100
>3x_Contig1430
Length = 7411
Score = 551 bits (278), Expect = e-157
Identities = 305/313 (97%), Gaps = 1/313 (0%)
Strand = Plus / Plus
Query: 43 ctttctagactactgtttgcaatttaataagggtaaaacgataccgagttcaattcagag 102
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7099 ctttctagactactgtttgcaatcgaataagggtaaaacgataccgagttcaattcagag 7158
Query: 103 gtttcttcgtcctcttgtacggaggtatctccaaatagttcatcatcgaacaaagatttc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7159 gtttcttcgtcctcttgtacggaggtatctccaaatagttcatcatcgaacaaagatttc 7218
Query: 163 tctcgcgcaccgaaaatattagagtacgatttcttaggagttttcaaacttgattaatcn 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 7219 tctcgcgcaccgaaaatattagagtacgatttcttaggagttttcaaacttgaaatagca 7278
Query: 223 t-ggtggtgctcacatcgttattgtttaaaatgtcatctaacgctttgcctaaattacca 281
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7279 tcggtggtgctcacatcgttattgtttaaaatgtcatctaacgctttgcctaaattacca 7338
Query: 282 tgtgtgattaccctcacggtgtccgttggaaaatcattgttcaaagtatttgacgcttga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7339 tgtgtgattaccctcacggtgtccgttggaaaatcattgttcaaagtatttgacgcttga 7398
Query: 342 gtggctatattat 354
|||||||||||||
Sbjct: 7399 gtggctatattat 7411
>3x_Contig1543
Length = 9648
Score = 363 bits (183), Expect = e-100
Identities = 243/259 (93%), Gaps = 3/259 (1%)
Strand = Plus / Plus
Query: 482 ctctactgatttgtcaaactgtgactctgttacggaaggagtatcatccctttccttcaa 541
|||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct: 4 ctctactgatttgtcaaagtatgactctattacggaaggagtatcatccctttccttcaa 63
Query: 542 aaaatcaataatcgttttgacgctattagaatccaattcctcaatgtgtgctcgagaaat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aaaatcaataatcgttttgacgctattagaatccaattcctcaatgtgtgctcgagaaat 123
Query: 602 aggagagctgaaaaattgttgctcaagttctctttaatggttattgccatttttggaagt 661
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 124 aggagagctgaaaaattgttgctcaagttctcttaaatgtttattgccatttttggaag- 182
Query: 662 tatc-atttgtatctcatcattagatatatctttctacggaattccgtttcctttcgatt 720
|||| |||||||||||||||||||||||||| ||||| | ||||||||||||||| |
Sbjct: 183 tatcaatttgtatctcatcattagatatatc-ttctaacggattccgtttcctttcagat 241
Query: 721 aaaggacaccagctgtaaa 739
||||||| ||||||||||
Sbjct: 242 aaaggaccacagctgtaaa 260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7533
Number of Sequences: 1807
Number of extensions: 7533
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)