BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA03FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1086 0.0
>3x_Contig1788
Length = 28493
Score = 1086 bits (548), Expect = 0.0
Identities = 659/687 (95%), Gaps = 8/687 (1%)
Strand = Plus / Plus
Query: 88 tgctcaatgcactgacaggcaaaactaccaacggcacatagaaacagatcattagtagtc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15686 tgctcaatgcactgacaggcaaaactaccaacggcacatagaaacagatcattagtagtc 15745
Query: 148 acgtgtatttatgcgggtaacactgttcacactggctcatctctgaacctttgatcaaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15746 acgtgtatttatgcgggtaacactgttcacactggctcatctctgaacctttgatcaaaa 15805
Query: 208 aaatttacgattttcaaaccaaattcaatatcatcatattctggtgaagtaagcttgaat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15806 aaatttacgattttcaaaccaaattcaatatcatcatattctggtgaagtaagcttgaat 15865
Query: 268 ttggatctaatgagagttactcttagattgaataggttctggttgtattgtgtgtgtcct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866 ttggatctaatgagagttactcttagattgaataggttctggttgtattgtgtgtgtcct 15925
Query: 328 tgtgtggtccttgtgtacactggcatctattcaacggaaattgtacagtatgttgagagc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15926 tgtgtggtccttgtgtacactggcatctattcaacggaaattgtacagtatgttgagagc 15985
Query: 388 aggaaggtttagtctgagtcacgtccatgctaacgttttggcaagaagtccacttgtaca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15986 aggaaggtttagtctgagtcacgtccatgctaacgttttggcaagaagtccacttgtaca 16045
Query: 448 tgctgccagtataccgaccatgcaaaccagattccaaagtcaatctgtgaataataatgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16046 tgctgccagtataccgaccatgcaaaccagattccaaagtcaatctgtgaataataatgc 16105
Query: 508 gtctacaggggagaaattagctagccttatcgacgaacaggttgatgaatgggtgaaagt 567
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 16106 gtctacaggggagaaattagctagccttagcgacgaacaggttgatgaatggttgaaagt 16165
Query: 568 tattggatcgttagaagaagagtttttgcaacaagattataacccagctacgttccttgc 627
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 16166 tattggatcgttagaagaagagttttcgcaacaagattataacccagctacgtcccttgc 16225
Query: 628 acaaggt-accaatctagaaattatatctttgaagaaagctatgggatttgaacaagccc 686
|| |||| |||||||||||| | ||||| ||| |||| ||||| ||| ||||||||||||
Sbjct: 16226 accaggtaaccaatctagaattaatatc-ttggagaaggctat-ggaattgaacaagccc 16283
Query: 687 agcttttgacccagttcaa-aacaatttaatgaattgggaaaacgtggaaccaagttccc 745
||| ||||| ||| |||| | ||| | ||||||| || |||||| ||| |||||||||
Sbjct: 16284 agc-tttgagccaagtcaagagcaaataaatgaat--gggaaacgttgaagcaagttccc 16340
Query: 746 atttccaaaaaaacaggattcagtttt 772
| ||||||||||||||||| |||||||
Sbjct: 16341 a-ttccaaaaaaacaggatccagtttt 16366
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8004
Number of Sequences: 1807
Number of extensions: 8004
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)