BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA04FM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1301 955 0.0
>3x_Contig1301
Length = 6951
Score = 955 bits (482), Expect = 0.0
Identities = 491/494 (99%)
Strand = Plus / Minus
Query: 75 ttacagagctgcggcttcggaatgatgtagttctttatagtatcaaaatcgatctttcca 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1932 ttacagagctgcggcttcggaatgatgtagttctttatagtatcaaaatcgatctttcca 1873
Query: 135 ttctctaaactgttaggagggaactgaaaccgtaccttcgacccctctgttggatgaaaa 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1872 ttctctaaactgttaggagggaactgaaaccgtaccttcgacccctctgttggatgaaaa 1813
Query: 195 agcgtatagaacacagtgtgtatgggtacaaacccatcgaatgtgctggtcatagctcat 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1812 agcgtatagaacacagtgtgtatgggtacaaacccatcgaatgtgctggtcatagctcat 1753
Query: 255 ggatgcgtgtgcagtgctgctggctgcattgtgttgtattttgcagatggacatcaattt 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 ggatgcgtgtgcagtgctgctggctgcattgtgttgtattttgcagatggacatcaattt 1693
Query: 315 tgaagttagctataatacggaaaaatcacaattcttgatcacaatccattttgtcggtga 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1692 tgaagttagctataatacggaaaaatcacaattcttgatcacaatccattttgtcggtga 1633
Query: 375 agaggatagtactattgaactgttcagcttcaacgtcagtatttaaaccaatattgaacg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 agaggatagtactattgaactgttcagcttcaacgtcagtatttaaaccaatattgaacg 1573
Query: 435 aaatctaattgaatttaattctgttatatagagcggcattttctaccctataatcaagct 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 aaatctaattgaatttaattctgttatatagagcggcattttctaccctataatcaagct 1513
Query: 495 tttattcccgattgctccattgatattattggtgacagtttaagttaataagattgtagt 554
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1512 tttatccccgattgctccattgatattattggtgacagtttaagtcaataggattgtagt 1453
Query: 555 cttgacatgtttgg 568
||||||||||||||
Sbjct: 1452 cttgacatgtttgg 1439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,835
Number of Sequences: 1807
Number of extensions: 10835
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)