BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA04RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1233 0.0
>3x_Contig1487
Length = 9002
Score = 1233 bits (622), Expect = 0.0
Identities = 668/677 (98%), Gaps = 5/677 (0%)
Strand = Plus / Plus
Query: 51 atcagacgaataacttctgttgatccaagtgcaatacataaagatagtgaagttagaaag 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7405 atcagacgaataacttctgttgatccaagtgcaatacataaagatagtgaagttagaaag 7464
Query: 111 aaaagactacaagatctttctttaacagtcctgagtaagggttaatatagattcatttca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7465 aaaagactacaagatctttctttaacagtcctgagtaagggttaatatagattcatttca 7524
Query: 171 gtgctgttactagacatcaattttaagacgattgctctaatttgatagtgaaatataaag 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7525 gtgctgttactagacatcaattttaagacgattgctctaatttgatagtgaaatataaag 7584
Query: 231 ggctgtttctactgctcaacatattatattgatctgaaaagttttccaacttttggcgtg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7585 ggctgtttctactgctcaacatattatattgatctgaaaagttttccaacttttggcgtg 7644
Query: 291 ctgattgagagcatttatcgatattaggtatcataatctagtgactgagtagagggtttt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7645 ctgattgagagcatttatcgatattaggtatcataatctagtgactgagtagagggtttt 7704
Query: 351 ggaaactaggtgaaataatagattattttgtcgccagtgctttttcgttgctgaagagcg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7705 ggaaactaggtgaaataatagattattttgtcgccagtgctttttcgttgctgaagagcg 7764
Query: 411 gattgagcataagtgtgaaatactcaatgccgatgtcaaagagagacaaacggaaatcgg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7765 gattgagcataagtgtgaaatactcaatgccgatgtcaaagagagacaaacggaaatcgg 7824
Query: 471 aggtgctgatagctgcgcaatcgttagaccaagaggttaagcatgtgaagaacctgaaac 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7825 aggtgctgatagctgcgcaatcgttagaccaagaggttaagcatgtgaagaacctgaaac 7884
Query: 531 gcctttcaataggatccatggatctactaatggatcctgaattggaataccgtgtatcat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7885 gcctttcaataggatccatggatctactaatggatcctgaattggaataccgtgtatcat 7944
Query: 591 cacgacaaggaacaggaacagcaacggatcaagatacaggaaacgccctacattgcttac 650
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 7945 cacgacaaggaacaggaacagcaacggatcaagatacagg-aacgccctacatcgc-tac 8002
Query: 651 ctcgtcgatanaaactgaaactactaaatcagtacaaaggggaacaagagtttgggaaat 710
|||||||||| ||||||||||||||||||||| || ||||||||||||||| | ||||||
Sbjct: 8003 ctcgtcgataaaaactgaaactactaaatcagaac-aaggggaacaagagtat-ggaaat 8060
Query: 711 gatgattaatcaggaaa 727
||||| |||||||||||
Sbjct: 8061 gatga-taatcaggaaa 8076
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8137
Number of Sequences: 1807
Number of extensions: 8137
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)