BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA05FM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1650 823 0.0
>3x_Contig1650
Length = 11257
Score = 823 bits (415), Expect = 0.0
Identities = 433/439 (98%)
Strand = Plus / Plus
Query: 87 taacgtagtcattcaagtcaagaattaaatttctcttttccatttttaatacgtattccg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7100 taacgtagtcattcaagtcaagaattaaatttctcttttccatttttaatacgtattccg 7159
Query: 147 ttggatcgaggttcttcaacttacagtaattgactaatacttcgttaatcttggaagtca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7160 ttggatcgaggttcttcaacttacagtaattgactaatacttcgttaatcttggaagtca 7219
Query: 207 caggtattctgttgtttgtgaaattgtactgaggattcaaattaggatacaagaacactt 266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7220 caggtattctgatgtttgtgaaattgtactgaggattcaaattaggatacaagaacactt 7279
Query: 267 ttatattcacatagttagaaccagaatcagacatttgtgtattcttagagggaataatcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7280 ttatattcacatagttagaaccagaatcagacatttgtgtattcttagagggaataatcg 7339
Query: 327 atttgtagtaacttaattgattgagatgagacagcccgtcattgctatcttcttgatcga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7340 atttgtagtaacttaattgattgagatgagacagcccgtcattgctatcttcttgatcga 7399
Query: 387 agtcatcggtcatgacacttggtaagggtgtctcttctttattccgttcaaactgttcat 446
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7400 agtcatcggtcatgacacttggtaagggtgtctcttcttcattccgttcaaactgttcat 7459
Query: 447 tggtcaatactttgcatatgacaacctcattatcaaatattgtgttgatctgctgagttc 506
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7460 cgttcaatactttgcatatgacaacctcattatcaaatattgtgttgatctgctgagttc 7519
Query: 507 tcttcaaaactccgaaatt 525
||| ||| |||||||||||
Sbjct: 7520 tctccaagactccgaaatt 7538
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,145
Number of Sequences: 1807
Number of extensions: 12145
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)