BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZA05RM1.SCF screened BAC_end
         (913 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1700                                                        1011   0.0  

>3x_Contig1700 
          Length = 16332

 Score = 1011 bits (510), Expect = 0.0
 Identities = 606/630 (96%), Gaps = 6/630 (0%)
 Strand = Plus / Plus

                                                                         
Query: 50    ttaacatctgaacttatcggagtgacactatccgtgacataggttccattatttgatatt 109
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14046 ttaacatctgaacttatcggagtgacactatccgtgacataggttccattatttgatatt 14105

                                                                         
Query: 110   gtagctaggtctccagttgctctgatattctctgtgatgatagaactgtttttattgaag 169
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14106 gtagctaggtctccagttgctctgatattctctgtgatgatagaactgtttttattgaag 14165

                                                                         
Query: 170   gttatgttgatgatatattcatagttggtaatgcttgcggacgtttgaatgacaaatccc 229
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14166 gttatgttgatgatatattcatagttggtaatgcttgcggacgtttgaatgacaaatccc 14225

                                                                         
Query: 230   cctgttctggtctgcaacggtaaaaccggttttgcagttctggtgcaagaatggcaagcc 289
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14226 cctgttctggtctgcaacggtaaaaccggttttgcagttctggtgcaagaatggcaagcc 14285

                                                                         
Query: 290   acatttacctaagtcgaaggcttgcttcctgtggtacggtacggtcatctctacatcttt 349
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14286 acatttacctaagtcgaaggcttgcttcctgtggtacggtacggtcatctctacatcttt 14345

                                                                         
Query: 350   ttgtcattttaagttccaatagtttttcgtttacccttattagtgacttcagcggctaat 409
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14346 ttgtcattttaagttccaatagtttttcgtttacccttattagtgacttcagcggctaat 14405

                                                                         
Query: 410   tcattggtatataaatctcttcatcagaatctaatgattagagtatcgttttttcaacct 469
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14406 tcattggtatataaatctcttcatcagaatctaatgattagagtatcgttttttcaacct 14465

                                                                         
Query: 470   actttatcgttgttctatagcaa-gcactatgtgggttaaaggcatactgatcat-taat 527
             ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct: 14466 actttatcgttgttctatagcaaggcactaggtgggttaaaggcatactgatcatataat 14525

                                                                         
Query: 528   gagtgttgcagcggggactttggt-ttcatggcttatggca-ttttaagcccatagtaga 585
             |||||||||||||||||||||||| ||||||||| |||||| | | |||||||||| |||
Sbjct: 14526 gagtgttgcagcggggactttggtattcatggctgatggcagtctaaagcccatagaaga 14585

                                                                         
Query: 586   tgtcaccataga-gaagaatttttgtcctcagatggggttgcc-attttgggcaaagctt 643
             |||||| ||||| |||||| | |||||||||||||||  |||| |||| | ||| ||| |
Sbjct: 14586 tgtcacgatagaggaagaagtattgtcctcagatgggtctgccaatttcgtgcagagcat 14645

                                           
Query: 644   cttttactgccttgaaagaaggtttgaaat 673
             | || |||||| |||||||| |||||||||
Sbjct: 14646 cattaactgccatgaaagaatgtttgaaat 14675


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,652
Number of Sequences: 1807
Number of extensions: 11652
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)