BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA06FM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 708 0.0
>3x_Contig1762
Length = 22098
Score = 708 bits (357), Expect = 0.0
Identities = 385/393 (97%), Gaps = 1/393 (0%)
Strand = Plus / Minus
Query: 87 gcacttacatgcagtgtattcgtcatctccgaattggtatcctccgcggtccaatttgtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7345 gcacttacatgcagtgtattcgtcatctccgaattggtatcctccgcggtccaatttgtt 7286
Query: 147 gatgttgctctcctgttgtatgcagatcttttcctcaagttattatttaaattattgttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7285 gatgttgctctcctgttgtatgcagatcttttcctcaagttattatttaaattattgttg 7226
Query: 207 ttgaaaccatattgtatatcagaagtcttacgacgttgtatggcattagaaagggaagcg 266
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7225 ttgaaaccataaggtatatcagaagtcttacgacgttgtatggcattagaaagggaagcg 7166
Query: 267 cttgacccatgattattgggagcaaggttgccgtaacttttctttctcacagagtttgat 326
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7165 cttgacccaggagtattgggagcaaggttgccgtaacttttctttctcacagagtttgat 7106
Query: 327 gaatctaaactcaaagtcggagattttaacgtcaccgaatctgaactgtcttgtaatagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7105 gaatctaaactcaaagtcggagattttaacgtcaccgaatctgaactgtcttgtaatagt 7046
Query: 387 tgtatactatagaaaaataactgttcagtggttcgttgatagaatagtgccactccaaaa 446
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7045 tgtatactatagaaaaataactgttcagtggttcgttgatagaaaagtgccactccaaaa 6986
Query: 447 gaatctgcttttggggatgtatttgagctcaat 479
|||||||||||| |||| |||| ||||||||||
Sbjct: 6985 gaatctgctttt-gggaagtatatgagctcaat 6954
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,442
Number of Sequences: 1807
Number of extensions: 14442
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)