BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA06RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig993 890 0.0
>3x_Contig993
Length = 4399
Score = 890 bits (449), Expect = 0.0
Identities = 526/545 (96%), Gaps = 5/545 (0%)
Strand = Plus / Plus
Query: 48 caacgctatctaactggctagttggcatagattcgatgtatggtacagtttcctcgcatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3594 caacgctatctaactggctagttggcatagattcgatgtatggtacagtttcctcgcatg 3653
Query: 108 gattggctgggacaatgtcattgacggaaacagaacaacagattgaattggacgcagaag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3654 gattggctgggacaatgtcattgacggaaacagaacaacagattgaattggacgcagaag 3713
Query: 168 aagctcatcatgaacagcctccaaatatcaagactgtatgggacaatgttactttgccaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3714 aagctcatcatgaacagcctccaaatatcaagactgtatgggacaatgttactttgccaa 3773
Query: 228 tcactttcactatggacgctcttaaagatattggacaattaacaggagtttcaaattctc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3774 tcactttcactatggacgctcttaaagatattggacaattaacaggagtttcaaattctc 3833
Query: 288 tttctttgttcacgaatatgaaaccaagttggaatctctggtcttctagttcagaaaatg 347
||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 3834 tttctttgttcacgaatat-aaaccaagttggaatatctggtattctagttcagaaaatg 3892
Query: 348 gcgccggctcggcaaaattagacgataagg-atgaatacagttggcttatatccccgttg 406
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3893 gcgaaggctcggcaaaattagacgataaggaatgaatacagttggcttatatccccgttg 3952
Query: 407 aacccctcctttcttccgaaagtttatcaaatgagaaagttctacctccagtttgatgat 466
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3953 aacccctcctttcttccgaaagtttatcaaatgagaaagttctacctcaagtttgatgat 4012
Query: 467 tgg-agccagtataacattctattttggaagttcaaagatgttatagttgctgtaatagt 525
||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4013 tggaagcaagtataaaattctattttggaagttcaaagatgttatagttgctgtaataat 4072
Query: 526 agatcccagcttcaagatgataagtgaagaaag-ctttttgatgaaattacaggaaagaa 584
|||| ||||||| |||| ||||||||||||||| ||||||||||| | ||||| |||||
Sbjct: 4073 agatgccagcttaaagaagataagtgaagaaagattttttgatgaattaacagg-aagaa 4131
Query: 585 ttgtg 589
|||||
Sbjct: 4132 ttgtg 4136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6963
Number of Sequences: 1807
Number of extensions: 6963
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)