BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA07FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1591 938 0.0
>3x_Contig1591
Length = 14045
Score = 938 bits (473), Expect = 0.0
Identities = 541/560 (96%), Gaps = 4/560 (0%)
Strand = Plus / Minus
Query: 87 attaatgacgttggtttcatttttaaactgatctccgaggagttgcaaacaatgagataa 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 666 attaatgacgttggtttcatttttaaactgatctccgaggagttgcaaacaatgtgataa 607
Query: 147 atagccgcaatacgccttttcatcctccattttgtttgatttacgatgaacaatagatgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 606 atagccgcaatacgccttttcatcctccattttgtttgatttacgatgaacaatagaggc 547
Query: 207 gcccacagctaaaatctccgatagaagatatggttcgttcctgccgaatgacagtaatat 266
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcccacagctaaaatcgccgagagaagatatggttcgttcctgccgaatgacagtaatat 487
Query: 267 atctctaagtggattattttggtcttgaaagaaaggtgtgatggaatccaaacagtcatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atctctaagtggattattttggtcttgaaagaaaggtgtgatggaatccaaacagtcatg 427
Query: 327 gtaaaaggttcgcacatatttatgatgcacaccacctagcttgaatgattctagagatgt 386
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 426 gtaaaaggttcgcagatatttatcatgcagaccacctagcttgaatgattctagagatgt 367
Query: 387 gttgaaagtgattgtattatcgaccaaaaaggagattggaactgatgaaaactccgaagc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gttgaaagtgattgtattatcgaccaaaaaggagattggaactgatgaaaactccgaagc 307
Query: 447 agtgttaagcattggaaagttcagatctggcagatctaagtcgttaaactcaagatcctt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agtgttaagcattggaaagttcagatctggcagatctaagtcgttaaactcaagatcctt 247
Query: 507 taattcatcgctaaccaaagagtcattcaactttatactaacaatggcgttgatattctg 566
||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct: 246 taattcatcgctaaccaaagagtcattcaacttcatactaacaatgtcgttgagattctg 187
Query: 567 aatcaaaagattgggcgtccatagcgttaatgctacctgcaagtttgatggttttggcaa 626
|||||||||||| ||| |||||||||||||||||||||||| || ||| | ||||||||
Sbjct: 186 aatcaaaagatt-ggcatccatagcgttaatgctacctgcaggtatga--ggtttggcaa 130
Query: 627 tttctgaatttaccaaagaa 646
| |||||||||||||||||
Sbjct: 129 -tcctgaatttaccaaagaa 111
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,794
Number of Sequences: 1807
Number of extensions: 26794
Number of successful extensions: 3274
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)