BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA08FM1.SCF screened BAC_end
(1038 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1407 690 0.0
>3x_Contig1407
Length = 9823
Score = 690 bits (348), Expect = 0.0
Identities = 378/384 (98%), Gaps = 3/384 (0%)
Strand = Plus / Minus
Query: 88 tacttatctttgag-agttatggtactacagacgccaagatagggggaaactgtaacgat 146
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7449 tacttatctttgagcagttatggtactacagacgccaagatagggggaaactgtaacgat 7390
Query: 147 tgcaggcgttaataggatcgagtccatctaacgttgctctttgtttttcctttaaagatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7389 tgcaggcgttaataggatcgagtccatctaacgttgctctttgtttttcctttaaagatc 7330
Query: 207 cgatatcttgcctttttccttaaagacggttccacggattttcatcactaaaaattgttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7329 cgatatcttgcctttttccttaaagacggttccacggattttcatcactaaaaattgttt 7270
Query: 267 taatattatatatatatatatatatcagttgacatttctatacagaattcaccacaatgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7269 taatattatatatatatatatatatcagttgacatttctatacagaattcaccacaatgg 7210
Query: 327 agatatgtacagttagcaggtcgtgaaggaatcccagaggtccgatcaggccaacacttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7209 agatatgtacagttagcaggtcgtgaaggaatcccagaggtccgatcaggccaacacttt 7150
Query: 387 tcagtatctgtttcgggtggtacgaagtttattgctggtttcctggtgggggtccctgct 446
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 7149 tcagtatctgtttcgggtggtacgaagtttattgctggtttcttggtgggggt-cctgct 7091
Query: 447 gtttgcgattgaatagtcgtacta 470
| |||||| || ||||||||||||
Sbjct: 7090 ggttgcga-tggatagtcgtacta 7068
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,500
Number of Sequences: 1807
Number of extensions: 16500
Number of successful extensions: 1984
Number of sequences better than 1.0e-20: 1
length of query: 1038
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1022
effective length of database: 10,329,639
effective search space: 10556891058
effective search space used: 10556891058
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)