BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA08RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig829 1294 0.0
>3x_Contig829
Length = 2277
Score = 1294 bits (653), Expect = 0.0
Identities = 714/728 (98%), Gaps = 5/728 (0%)
Strand = Plus / Plus
Query: 47 gcttctattcatggacctatcaccttagaaattgcctctgatgtggaaagcagttttata 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gcttctattcatggacctatcaccttagaaattgcctctgatgtggaaagcagttttata 851
Query: 107 aaaaaggcagactgtgacactttcacagtcagctattttccaacaaataatggctggcga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 aaaaaggcagactgtgacactttcacagtcagctattttccaacaaataatggctggcga 911
Query: 167 cagtatacccaaaacaggactcatgccgaagaaagagtaatgaacaatagtatttttata 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 912 cagtatacccaaaacaggactcatgccgaagaaagagtaatgaacaatagtattttcaaa 971
Query: 227 actgacgaaaccaggattgaccatacagatcacagtgtttcagctgattatccacatctg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 actgacgaaaccaggattgaccatacagatcacagtgtttcagctgattatccacatctg 1031
Query: 287 aaatcttcattaaaagacgaatctgtcgaatatttttcaaatgatcaatctttcgttcga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 aaatcttcattaaaagacgaatctgtcgaatatttttcaaatgatcaatctttcgttcga 1091
Query: 347 tatattgatgccaggttcgattcagaaagtataggatctacaaattcgtcagagaaacaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tatattgatgccaggttcgattcagaaagtataggatctacaaattcgtcagagaaacaa 1151
Query: 407 actctctgttcttcaatcaacacaagcaaaatcatttatccaagtatggctggagctcag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 actctctgttcttcaatcaacacaagcaaaatcatttatccaagtatggctggagctcag 1211
Query: 467 tttgatggtgatccaatgcctcttttagatcatccgaatttgacacacttcagtggtttt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 tttgatggtgatccaatgcctcttttagatcatccgaatttgacacacttcagtggtttt 1271
Query: 527 ttggctgaaaatgattctgttgaaccttctcttg-aaatgac-aggacatgcagacagaa 584
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1272 ttggctgaaaatgattctgttgaaccttctcttgaaaatgacaaggacatgcagacagaa 1331
Query: 585 aacttgtctaatacgatcaattcatctgacactacgaag-aattcttagcttgggaatat 643
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1332 aacttgtctaatacgatcaattcatctgacactacgaagaaattcttagcttgggaatat 1391
Query: 644 aaagatgataaatttgnttaagtaccgtgtacccctccaattg-agataacgttgaatgg 702
|| ||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1392 aaggatgataaatttgttaaagtaccgtgtacccctccaaatgaagataacgttgaatgg 1451
Query: 703 gacattgatcactgtcatttctacaaacaattttcacttaagggaaaagttgaaaaaaaa 762
||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||
Sbjct: 1452 gacattgatcactgtcattactacaaacaattctcac-taaaggaaaagttgaaaaaaaa 1510
Query: 763 acggttac 770
||||||||
Sbjct: 1511 acggttac 1518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8577
Number of Sequences: 1807
Number of extensions: 8577
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)