BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA09FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig620 825 0.0
>3x_Contig620
Length = 2176
Score = 825 bits (416), Expect = 0.0
Identities = 494/520 (95%)
Strand = Plus / Plus
Query: 81 atcaccacggcacaatgctaatagattcagacctgtctcaattcaaaggtttactaaaac 140
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 459 atcaccacggcacaatgctaatagattcagacctggctcaattcaaaggtttactaaaac 518
Query: 141 cggatgtaattcctggggttgaatggacatgtaatagtgtcgaaagtgttagatctaagg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cggatgtaattcctggggttgaatggacatgtaatagtgtcgaaagtgttagatctaagg 578
Query: 201 ttgataacattgtttgaaaagcaatatcgtcaattgatgacttttgcaatttgattacag 260
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 579 ttgataacattggcggaaaagcaatatcgtcaattgatgacttttgcaatttgattacgg 638
Query: 261 atcagttcaaaaatctggttgatgactctgaaattcctatgttttattgggatgaatcaa 320
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 639 atcagttcagaaatctggttgatgactctgaaattcctatgttttattgtgatgaatcaa 698
Query: 321 gttctttactcgagatcacagagatctccgaatacttacggagcaaagaatggaaattta 380
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 699 gttctttactcgagatcacagagatctccgaaaacttacggagcaaagaatggaaattta 758
Query: 381 tgtcaagcccatagtttgacgtaatttgtaatgacgttacaatatatgtcgagaatggtg 440
||||| ||||| |||||| |||||||||||||||||||||||| | |||||||| ||||
Sbjct: 759 tgtcaggcccaaggtttgaggtaatttgtaatgacgttacaataaaggtcgagaagggtg 818
Query: 441 taattattgaatctgactggcctgaattagttgggatgccattttacatattttatgacg 500
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 819 taattattgaatctgactggcctgaattagttgggatgccattttacaaattttatgacg 878
Query: 501 aagtaagggaagatgacaaaatattcaaacatttacttgcaataattatttatactattt 560
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 879 aagtaagggaagatgacaaaatattcaaacatttactgtaaataattatttatactatat 938
Query: 561 taatgcgattaaggcaggataatttcacacgcaggataaa 600
||||| ||| ||| |||||| |||||||||||||||||
Sbjct: 939 taatgtgataaagcagggataaattcacacgcaggataaa 978
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,188
Number of Sequences: 1807
Number of extensions: 14188
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)