BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA09RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1061 1174 0.0
>3x_Contig1061
Length = 4663
Score = 1174 bits (592), Expect = 0.0
Identities = 767/815 (94%), Gaps = 8/815 (0%)
Strand = Plus / Plus
Query: 52 cgattattcatttttgatttgactgatctatatagtgattgagaatggcgttagattttc 111
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 3247 cgattattcatttttgatttgactgatctatagagtgattgagaatggcgtttgattttc 3306
Query: 112 agcaagtaacaatctttactattacttccacaggcacaatcacaacttcctagaatggtg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307 agcaagtaacaatctttactattacttccacaggcacaatcacaacttcctagaatggtg 3366
Query: 172 tctatggaatgtatgaaaagatacctttgtggctcttcaatggaatctatgctctcatta 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3367 tctatggaatgtatgaaaagatacctttgtggctcttcaatggaatctatgctctcatta 3426
Query: 232 tgatttattaacttccatattggatgtctcatgtcccattcccatttgatgtgaagttct 291
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 3427 tgatttattaacttccatattggatgtctcaggtcccagtcccatttgatgtgaagttct 3486
Query: 292 tcacctttatcaatgaatcttagagctctaagaacgaactttatctcatcctggttattg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 tcacctttatcaatgaatcttagagctctaagaacgaactttatctcatcctggttattg 3546
Query: 352 gaattagtcaatttgattagtgactagttcaacattgggattgcatgatcgtctcaagta 411
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3547 gaattagtcaatttgatt-gtgactagttcaacattgggattgcatgatcgtctcaagta 3605
Query: 412 tctcgttaaatttccacttaacctggcatcaatataaatcggccagtgaggatgaataat 471
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3606 tctcgttaaatttccacttaacctggcatcaatataaatcggccagtggggatgaataat 3665
Query: 472 gactttaagttttgcagttccccagactctatagttatttcttggatcttctaagtactt 531
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3666 gactttaggttttgcagttccccagactctatagttatttcttggatcttctaagtattt 3725
Query: 532 tctttggaaatcaatctctcctaag-attcatcgatgtagtctccttcatcacatccttg 590
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3726 cctttggaaatcaatctctcctaagaattcatcgatgtagtctccttcatcacatccttg 3785
Query: 591 cttcaagtatacagctaaccttgnggtatccatggaacaatcttgagtgattactgccat 650
|||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||
Sbjct: 3786 cttcaagtatacagctaa-cttggggtatccagggaacaatcttgagtgattactgtcag 3844
Query: 651 aatatggtttaatttcaatcgaactaagtttgaacgtttatttatgattacgtataaccc 710
||||||||||||||||||||| | || ||||||||||| ||||||||| | |||||||||
Sbjct: 3845 aatatggtttaatttcaatcggaataggtttgaacgttaatttatgataaggtataaccc 3904
Query: 711 catcttcatcgccctgggcttttacgaatagttcaacgtatttatctttgttat-atttg 769
|| ||||| | ||| |||||||||| |||||||||||||||||||||| || |||||
Sbjct: 3905 agtcgtcatcagcgtggtcttttacgaaaagttcaacgtatttatctttgtaatcatttg 3964
Query: 770 aactcaaa-ggaaattcac-gttagattagc-tctttaacatttataaaaacaa-gttcc 825
|| ||||| ||| || ||| || ||| ||| |||||| ||||||| ||||||| ||||
Sbjct: 3965 aagtcaaagggagatacactgtaggataagcttctttagcatttattaaaacaatgttcg 4024
Query: 826 taagagcatcttcggaaggaatggcccctggttct 860
|||||| |||| |||| ||||||||| ||||||||
Sbjct: 4025 taagaggatctgcggatggaatggcctctggttct 4059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6476
Number of Sequences: 1807
Number of extensions: 6476
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)