BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA10FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 975 0.0
>3x_Contig1771
Length = 25932
Score = 975 bits (492), Expect = 0.0
Identities = 526/536 (98%), Gaps = 1/536 (0%)
Strand = Plus / Plus
Query: 86 tgaaagagaaaaaaacgagtttggagcttctccggaagatgaagaataaagttcaagcat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18231 tgaaagagaaaaaaacgagtttggagcttctccggaagatgaagaataaagttcaagcat 18290
Query: 146 tagtggatgcattctttggttttcggcgtattcagtatctgtgagactaatttcgatagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18291 tagtggatgcattctttggttttcggcgtattcagtatctgtgagactaatttcgatagt 18350
Query: 206 tatcctagcaattattatatccaaaggaaggctgtagatataaacaacatgggtggtttc 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18351 tatcctagcaattagtatatccaaaggaaggctgtagatataaacaacatgggtggtttc 18410
Query: 266 agatttccaatcaagacaaagcttccttcaacgtatttgaatgctagagttatcagagac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18411 agatttccaatcaagacaaagcttccttcaacgtatttgaatgctagagttatcagagac 18470
Query: 326 aatttcaagagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaattcatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18471 aatttcaagagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaattcatt 18530
Query: 386 gctagaaatactactctacctccaaggtcgagaatggaagctcagttacaactttctgtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18531 gctagaaatactactctacctccaaggtcgagaatggaagctcagttacaactttctgtg 18590
Query: 446 atgcctaactatacaagaatgacacatatcaagaacagatgtattgaaacgggacactcc 505
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 18591 atgcctaactatacaagaatgacacaaatcaagaacagatgtattgaaacgggacactcc 18650
Query: 506 agatctgttctgagtgatttcagattgtgtagattgcaattcagagaacttgccaggaaa 565
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 18651 agatctgttctgagtgatttcagattgtgtagatcgcaattcagagaacttgccaggaaa 18710
Query: 566 agggatctacctggtgtgaaaaagggttgtatggtagatgcattttaacatttttt 621
| ||||||||||||||||| ||||| ||||||||||||||| |||| ||| ||||
Sbjct: 18711 ggtgatctacctggtgtgaagaaggg-tgtatggtagatgcagtttagcatctttt 18765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9938
Number of Sequences: 1807
Number of extensions: 9938
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)